Coregonus clupeaformis (lake whitefish): 121576885
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Entry
121576885 CDS
T08357
Name
(RefSeq) transcription initiation factor TFIID subunit 4 isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121576885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121576885
03036 Chromosome and associated proteins [BR:
cclu03036
]
121576885
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121576885
Coactivators
SAGA/TFTC/STAGA complex
121576885
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
121576885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
121576885
NCBI-ProteinID:
XP_041746367
LinkDB
All DBs
Position
Unknown
AA seq
996 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSDIKREGSTGTGSQFSGK
LRDQVGSLEPPQQGHPKAVLNAEPSANQAISNTSITASTSSITTGGIINAGTNLQTHGAA
SRIISPAPPGSVTLPAQTTSFNRGTVLGPAETSVVTTPNSNLTTTTTTAIRTASPGLQSF
NGSTGAVKLVNSPAAAPQIGSGGNTVISTASAGNSIIVSMASQPPPLPNYPVSQSAVAGV
TPTIALQRHPNPMASASQNGVVSAVVTQGAGSPGATTSQVMNRSNTLMHTKMVAPNQPVS
AGQSIILGGSPSPVVVNSPISPAQSVASPTLTAGVKPTVNGVGQPTVTIVRPPGAPVMTT
SVQQQRPGLVASPTRTVAPQLVVRPPQQTTIQLPPGFTIPPGMVLVRTDTGQLVMVPQQV
LAQAQAKTQQGQAAVSNISPRPPTPTAGATIRVSTPSQAPCTPQAVRLGSPVQARMLQSP
SPTSPAIQKAITMAPAGASVSVKMTTPQKAQTVITGGQALAKPGAVRPTITLNTAAASAS
TTPTTGTAPVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKSLVQDLLDAKIEPE
EFTTRLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTNASALAAPSTTTITRA
RLPTTVSPVTGIVRTPTTALGVRRPGVQGVQTRMPMVITQTIRPQVARGPTIIAGRSPVG
IGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGTKIRSCK
DEAFLPPGLLHRRIMETAKRFGVTEVPAEAVNYISHATQARLRSMLEKVSTIAQHRTDGG
KDEEWYEPSTDVRAQLRFFEQLDRMEKQRKDEQEREVLLKAAKSRARQEDPEQARLKAKA
KEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGSSTSGTEVASSSGAGSSTATSSRQ
QLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagca
gtaagtgacttagttggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattccgatatcaagcgagaaggatctacgggcactggcagccagttctcagggaaa
ctgcgtgatcaagtggggtctctggagccgccacaacaaggacacccaaaagcggtgtta
aacgcggaacccagcgcgaatcaggcgatttccaatacgagtatcaccgcttctacctct
tccatcactactggaggcattataaacgctggtaccaatttacaaacacatggagccgca
tctcgaataatttcccccgcaccaccaggatcggtaactttgcctgctcagacgacaagc
ttcaacagagggactgttttgggtccagctgaaacatcggtggtgactactcccaactca
aacctaacaacaacaacaacaacagctatcaggactgcttcacctggattacagagtttt
aacggtagcactggagctgtgaagttggtcaactcgccagctgctgctccccaaatcggg
tcaggcggcaacactgttataagtactgccagtgcgggcaactctatcattgtgtctatg
gcttcacagcctcctcctctgccaaactatcctgtatctcaatctgctgtggcaggtgtt
actcccactattgcattgcaaaggcatcccaaccccatggccagtgcctcacagaatgga
gtagtttctgcagtggtcacacagggtgcaggttctccaggggccaccacttctcaggtc
atgaaccgcagcaacactctcatgcacactaaaatggtggcacccaaccagccagtctct
gctggccaatcaataattctcggagggtctccctctcctgttgttgtgaactcacccata
agcccggcacagagtgtggcaagtcccactctcacagccggggtgaaaccaacggttaac
ggagttggtcagcccacggtgaccatcgtgaggccccccggtgctcctgtgatgaccacc
tccgtacagcagcagagacctgggctggtagcgagtcccacgaggactgtggcaccacag
ctggtcgtcagaccaccacagcaaaccaccattcagttaccacctggatttaccatacca
cccggtatggtgctggtgcgtacggacacaggccagctggtaatggtgcctcagcaggtt
ctagcccaggcccaggctaagactcaacaaggccaggcagctgtctccaacatctccccc
cggcctcctacacctaccgctggggccaccatcagagtcagtactcccagccaggcccct
tgtacaccccaggctgttcggctggggtcccctgtccaggccagaatgttgcagtccccc
tctcccaccagccctgctatacagaaggccataaccatggctcctgcaggtgcctctgtg
tcagtgaagatgaccacccctcagaaggcccagacagtgatcacagggggtcaggccctg
gccaagcctggtgctgtacggcccactataacccttaacactgcagcagccagtgcctcc
acaacccctaccacaggaacggcaccagtctcccaggaaatgcaagaaaatgtgaagaag
tgcaagaacttcctgtccaccctgatcaagctggcgtcccacaactccccgtctccagac
acatccaagaacgtcaagtccctggtgcaggatcttctggatgcaaaaattgagcctgag
gagttcaccacacgtctgcaggctgagctgaagtcctctccacagccgtacctcatcccc
ttcctcaagaaaagccttcctgccctgcggctgtccctgctcaacaaccagcagtctctg
ctggcctccactaacgcttctgccctggccgctccctccactactaccatcaccagggcc
cggctccccaccaccgtcagccccgtcacgggcattgtcaggacacccaccactgctctg
ggtgtgagaagaccaggggttcagggggtccagactcgcatgccaatggtcatcacccag
accatacggccacaagttgcaagaggacccactattattgcaggcagatctcctgtgggc
attggtgcccaggcctctgccaatcagaagaagctaaatgagcctggaggcgggacgttc
agagatgatgatgacatcaacgacgtggcgtccatggcgggggtgaacctgaacgaggag
aacgcccgtatcatggccaccaactctgagctggtgggcaccaagatccgctcctgtaag
gacgaggccttcctcccgccaggcctgctgcacagacgcatcatggagaccgccaagagg
tttggggtgacagaggtcccagctgaggcagtgaactacatctcccatgctacccaggcc
aggctgagatccatgctggagaaagtgtcaactatcgcccagcaccgcactgacggggga
aaggatgaggagtggtatgagccgtcgacagacgtcagggcccagctccgcttctttgag
cagctggacaggatggagaaacaaaggaaggacgagcaggagagggaggtcctactcaag
gctgccaagagtcgcgccagacaggaggacccagagcaagctcggttgaaggcgaaagct
aaagagatgcagcaggcggagcaggcccagatccggcagcgtgaagccaacctcactgcc
ctggcggccatcggtccccgcaagaaacgcaagatggactcgccagggagctctacatcg
ggcacagaggttgcttcgagttcaggggctggctcttccacagccacctcctcccgccaa
cagctccgtcagcggatcacgcgagtcaatctcagggactttatcttctgcctggagcag
gagagggccacatccaggtccttactactctataaggctctcctgaagtag
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