Coregonus clupeaformis (lake whitefish): 121576888
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Entry
121576888 CDS
T08357
Name
(RefSeq) terminal nucleotidyltransferase 4B
KO
K03514
non-canonical poly(A) RNA polymerase PAPD5/7 [EC:
2.7.7.19
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121576888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121576888
03016 Transfer RNA biogenesis [BR:
cclu03016
]
121576888
Enzymes [BR:
cclu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
121576888
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
121576888
Transfer RNA biogenesis [BR:
cclu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
121576888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTPAP-like_central
PAP_assoc
NTP_transf_2
Polbeta
PAP_NTPase
TUTase
Motif
Other DBs
NCBI-GeneID:
121576888
NCBI-ProteinID:
XP_041746371
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MDPRIAWFQPEQLGPANSAWMNIWLTTQGLGNLSLSNHNNHGSAVWNTPTTKTSPSTTVS
VNCGTGNVNGNVIQNGVPDAGTSSSEVRMQGTINPKGGNEIEQQSDLLEANINQHPAGRG
SSGPWVVGGTAFGSWRERESECGLGKRRRRDNRASTFGFNRSLSIGSNSAVDDAGCRGVG
YTGTPWKTRNYSAGILGLHEEIQDFYACMSPRPEEERMRKEVVERIERVIKDLWPTADVQ
VFGSFSTGLYLPTSDIDLVVFGKFREGDSLPLWRLEEALRKHKVVEENSVKVLDKATVPI
IKLTDSLTDVKVDISFNMKNAVKAAALIKDYKKKYPVLPYLVLVLKQFLLQRDMNEVFTG
GISSYCLFLIAVSFLQLHSREDACSPNANTGVLLIEFFELYGRHFNYLKTGIRIKDGGCY
LSKDEVQKSMLDGYRPSLLYIEDPLQPGNDVGRSSYGAMQVKQVFDYAYMVLSHAVSPIA
KYYPNNHSESILGRIIRVTQEVAEYRDWITMKWADLSLNSLTLNGNDVTLLVEPQQTYEC
NNNRSEEGAESPSSSSPPPSSPSSSSSSSSPQSSSACSSDADSDGSPCKTVMPRGRRGLS
AHRAAPLGLTNYRATSSSSESRVSHSNKSKVDRASSTSRQNSHANTQPNTETGQSSGRSH
QGSRRSCPGRRRKPQPQHQRKPAPAVEDLCR
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggatccaagaatcgcctggttccagccagaacagctcggccctgccaacagcgcgtgg
atgaatatttggttaacgacacaaggtctgggcaatttgagtttgagtaatcataacaac
cacggctctgctgtgtggaacacgcccaccaccaagactagccctagtacaactgtatcg
gtgaactgtggcacgggaaacgtgaacggaaacgtgattcagaacggagtccccgacgct
ggtacgagcagcagtgaggtgaggatgcaagggacgatcaatccaaaaggcggtaatgaa
atagaacagcaatccgacttattggaagcaaatatcaaccagcatcctgcggggaggggt
agtagtggaccttgggttgtgggtggcactgcattcggtagctggagagaaagagagagc
gaatgtggacttgggaagagacggaggagagacaaccgagcgagcactttcggatttaac
cgcagtttgagtattggcagtaactcagcagtggacgacgctgggtgccgtggagttggt
tacacaggcacgccttggaaaaccaggaactactctgcagggattttggggctccatgag
gagatccaggatttctatgcctgcatgtctccgcggccggaggaggagaggatgaggaag
gaggtggtggagaggatagagcgggtcattaaggacctttggcccactgctgacgttcag
gtatttgggagtttcagcacaggtctctatctacctaccagtgacattgacctggtggtg
tttgggaagttcagggaaggagacagcctccctttgtggaggttagaagaggccctgagg
aaacacaaagtggtggaggagaattctgtcaaagtgctggacaaggccacggtgccaatc
atcaaactgacagactctctcacggatgtcaaagttgacatcagtttcaacatgaagaat
gctgtcaaagctgctgccctcatcaaagattataaaaagaaatatcctgtgcttccatac
ctggtgctagtcctgaaacagttcttattacaaagagacatgaatgaagtgtttacagga
ggcatcagctcctactgcctcttcctcatcgctgtcagcttcttacagctccatagcagg
gaggacgcctgcagtcccaacgccaacactggcgtcctgctcatagagttctttgagctg
tacggccgccattttaactacctgaagactgggatccggatcaaagacgggggctgctac
ctctccaaagacgaggtccagaagagcatgctggatggatacagaccatccctgctctac
atcgaggatccactgcagccaggtaatgatgtgggccgtagctcgtacggggccatgcag
gtgaagcaggtgtttgactatgcctacatggtgctgagccacgctgtgtcgcccatcgcc
aagtactaccccaacaaccacagcgagagtatactgggcagaataatccgggtgactcag
gaagtggcagaatacagagactggatcacgatgaagtgggctgatctatcactgaactct
ctgaccttaaatggaaatgatgtcacattgctggtggagcctcagcagacgtacgaatgc
aacaacaatcgctctgaggaaggggcggaatctcccagctcctcctctcctcctccttcc
tctccatcctcctcttcgtcatcctcctctccgcagtcttcatcggcttgctccagcgat
gctgattcggacggaagcccctgtaaaacggtgatgccgcggggtaggcggggcttatcc
gcacacagagccgcccctctaggattgaccaattacagggctacgagttcctcttccgaa
agccgcgtgagccactcgaacaagagcaaggtggacagagcgagttcgacgtctcgtcag
aacagccatgccaacacacagccaaacacagaaacaggacagtcgtcaggcaggagccac
caaggcagcaggcggagctgtcctggtaggaggaggaaacctcagcctcagcaccaacgc
aaacctgcacctgcagtggaggacctctgtagatag
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