Coregonus clupeaformis (lake whitefish): 121576900
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Entry
121576900 CDS
T08357
Name
(RefSeq) laminin subunit beta-1-like isoform X1
KO
K05636
laminin, beta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121576900
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121576900
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
ATG17_like
F5_F8_type_C
Lipase_GDSL
Motif
Other DBs
NCBI-GeneID:
121576900
NCBI-ProteinID:
XP_041746390
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All DBs
Position
11:46096231..46147405
Genome browser
AA seq
1787 aa
AA seq
DB search
MLIFQIATMLSAGACVLAQVGIPEFSDVCTEGSCYPATGDLLIGRAHQLSTNSTCGLHRP
EQFCIVSHLQDEKKCFLCDSTDVYVKSMVDTTTGHRVENVVTTFAPNRLKTWWQSENGLE
KVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKNWQVYRYFAYDCEAAFPAISP
GPMQKVDDIICDSHYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFTK
LHTLGDNLLDSRMEIKEKYYYAVYDMVVRGNCFCYGHASECAPVDGAGDGVEGMVHGHCM
CNHNTMGLNCEKCQDFYHDLPWRPAKGRNTNACKKCNCNQHSGLCHFDMAVYVSTGNVSG
GVCDECQHNTMGYNCEQCKPFYYQHPERDIRDPSICEPCNCDPVGSLNGGICDRMTDVSS
GLIAGQCRCKPNVEGEYCDQCKQAHYGLGDHPLGCLACTCNALGTVPGGSPCDTDSGDCF
CKRLVTGRNCDQCMPQHWGLSNDMDGCRPCDCDLGGALNNDCSQETGQCVCREHMFGRRC
DQVESGFYFIALDHYTYEAEDAKFGPGVTVVQRPHPQDRSPTWTGIGFVNVPEGAYMEFS
IDNIPHSMEYDILIRYEPQLPDQWEEVLMTVMRPSLISADSRCANTMPDDDNQMISLHPG
SRYVVLPRPVCFEAGMNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEIFTGSEG
GDVATNSAWDTFQRYRCLENSQSVVKTPSTDICHNFIFSVSALLHQGAKACQCDPQGALS
TVCDASGGQCQCRPNVVGRNCDKCAPATYLFGPSGCRPCDCSPQGSEDAFCHEATGQCVC
IPGAYSRQCDRCLPGHWGFPNCRLCTCNGHTEQCDPYSGKCLGCREQTTGHNCERCLDGY
YGDPILGSGDHCRPCMCPDGPGSGRQFAGGCYRGLDSHYQVFCICSPGYRGARCEECAPG
YYGNPHENSGQCQPCQCNNNIDMLDQESCDARTGECLKCLYHTEGQGCHSCKLGYYGDAL
TQNCRKCMCNHLGTNPATCPSVGDCHCDLGSGQCQCLPNVVGQHCDQCAPETWNMASETG
CDVCDCDPNHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGDPEVKCNACDCDPRGIA
EQQCNKANGHCVCVEGVSGPRCDVCTRGYSGTFPYCERCHQCFADWDVVVGQLTNQTHRL
VNKVNTIKASGITGPYKHTIDNMEQSAGAIRTILAQNPATEPLSEIQQLLEQATDLMEEM
SNKLNLTEEALAQVSSDDNSTNTKLDSLKEDAQKLDRTVKELLDQVEFIKNTDVRGATDS
VTKYYQQSLAADARANASTSGPGNPVESSAILRQATEDKMNDTREEFHRRQGKHAKRLDD
LAGQLETLDLSELSEKTCGSPADEACVDSPCGGLSCVDSEGNRRCGGEGCDGLVTLANNA
WQKAKDFDQEILTAMEEVDKLAKMVSEAKVKADEAKLSAQNVLLKTNGTKQRVDQSNEEL
RSLIRQIRDFLTQDAADLASIEAVANEVLAMQMPTTPAQLQNLTDEIRERVEDLSHVETI
LNQSSDDIQRADSLLEQARRASKEATDVRDTAEMVKQVLEEAERAQSAAVKAIKQATTDI
KGTNDLLTSVESETADSEYKLNNATQRLLWLERDVMLLREKALNTSLSSEQTEKDAERIN
KVAEQVKKDLDSELKDKYSTVEDLITQKAGGVANAKKRAELLQQEAKDLLLQASDKLQLL
KDLEKSYDDNQKTLEDKANQLVDLEKSIKELLQEISHKVTVYSTCLF
NT seq
5364 nt
NT seq
+upstream
nt +downstream
nt
atgttgatatttcaaattgcgaccatgctatccgcaggggcgtgcgtccttgcccaggta
ggcatacccgagttcagcgatgtatgcactgaggggagctgctacccggctacgggagac
cttctcattggcagagcccaccaactctccaccaactccacatgcggccttcaccggccc
gaacagttctgtatcgtcagtcatttacaggatgagaagaaatgctttttgtgtgactcc
accgacgtctacgtcaaaagcatggtggacaccaccaccggccaccgggtggagaacgtc
gtgaccacattcgcccccaaccgcttgaaaacctggtggcagtcagagaatggtcttgag
aaagtgaccatccagctgaacttggaggcggagtttcatttcacccacctcatcatgacc
ttcaagaccttccggcctgctgcaatggtgatcgagcgctcggctgactttgggaagaac
tggcaggtgtaccgctactttgcatacgactgtgaggcggcattccctgcgatatcccca
gggcccatgcagaaagtggatgacatcatctgcgattcacattactccgacatcgaacca
tcgacagagggagaggtcatcttccgagttttggatccagctttccgtattgaagatccc
tacagccccagaatccaaaacatgttgaagatcaccaacctgagggtgaagttcaccaag
ctgcacaccctgggagacaacctgctggactcccgcatggagatcaaggagaagtactac
tacgctgtctacgacatggtggtccggggtaactgcttctgctacggacacgcctccgag
tgcgcccccgtcgacggggctggggatggagtggagggcatggtccatggccactgtatg
tgcaaccacaacaccatggggctaaactgtgagaagtgtcaggacttctaccacgacctg
ccctggagaccagccaagggacgcaacaccaatgcctgtaaaaagtgtaactgtaaccag
cactcaggcttgtgtcacttcgacatggcagtgtatgtatctacgggtaacgtgagcggc
ggtgtgtgtgacgagtgccagcacaacaccatgggttacaactgtgaacagtgcaagcct
ttctactaccaacacccagagagggacatccgtgaccctagcatctgtgaaccatgtaat
tgtgatccggtgggctctctgaacggcgggatctgtgacaggatgactgatgtgtcgtct
ggactgattgctggccagtgtcgctgcaagcccaatgtggagggagagtactgtgaccag
tgcaaacaggcccactatggcctgggtgaccaccctctgggctgcctggcctgcacctgt
aatgccctggggacagttcctggagggagtccgtgtgatacagactcaggggactgtttc
tgcaaacgcctggtcacagggagaaactgtgaccagtgtatgcctcagcactgggggctc
agcaatgacatggatggctgcagaccatgtgattgtgacctgggtggagccctcaataac
gactgttctcaggagactggccagtgtgtgtgtagagaacacatgtttggccggcgctgt
gaccaggtggagtcaggcttctacttcatcgccctggaccactacacctacgaggccgag
gacgccaagtttggacctggtgtgacagtagtgcagagacctcaccctcaggaccgtagc
cccacctggacagggataggttttgtcaacgttcccgagggggcctacatggagttctcc
attgacaacatcccccactccatggagtacgacatcctcatccgttacgagcctcagtta
ccagaccagtgggaggaggtgttgatgacggtgatgcggcccagtttgatttcagcagac
agtcgctgtgccaacaccatgcctgacgacgacaaccagatgatatccctccaccccgga
tcacgatatgtggtgctccccagaccagtgtgtttcgaggcagggatgaactacactgtt
cgtctgagcctgcccctctactctgcactcagcgacgtccagtccccatatacactcatc
gactcgattgtgctgatgccccactgtaagaacctggagatcttcactggttctgaggga
ggtgacgtggccaccaacagtgcctgggacaccttccagcgctaccgctgtctggagaac
agccagagcgtagtgaagaccccctccacagacatctgtcataacttcatcttcagcgta
tctgctctgctgcaccagggagctaaagcatgccagtgtgacccgcagggcgccctcagc
acggtgtgtgacgccagtggcgggcagtgccagtgtcgccccaacgtggtgggcaggaac
tgtgacaagtgtgcccctgccacgtacctgtttggacccagcggctgcagaccctgtgat
tgcagtccccagggatcggaggatgcgttctgccacgaggccacaggccagtgtgtgtgt
atccccggggcgtacagccgtcagtgtgaccgctgtctgccgggtcactggggcttcccc
aactgtcgcctctgcacctgcaacggccacacagagcagtgcgacccctactccggaaag
tgcctgggttgccgagaacagaccaccggacacaactgcgagaggtgtctggatggttac
tacggcgaccccatcctgggttcaggcgaccattgtcggccctgtatgtgtccggatggg
cccggcagcgggcgacagtttgccggcggatgttaccgcggtctggactcccactaccag
gtgttctgtatctgcagccccgggtacagaggtgccagatgtgaggagtgtgctccaggt
tactatggaaacccccatgagaacagcgggcagtgccaaccctgccagtgcaacaacaac
attgacatgctggatcaggagtcctgtgatgccagaacgggtgaatgtctcaaatgtctc
tatcacactgagggtcaaggctgccacagctgcaagctgggttactatggagatgccctc
acacaaaactgcagaaagtgtatgtgtaaccacctgggcaccaacccagccacgtgcccg
tcagtgggtgactgccactgtgatctcggcagcggtcagtgccagtgtctaccgaatgtg
gtgggtcagcactgtgaccagtgtgcccctgaaacctggaacatggccagcgagacgggc
tgcgacgtctgcgactgtgaccccaaccactcatttgggacgtcctgcaatgagctgagt
ggccagtgctcctgtaagcctggctttggtggtaaaacgtgtcgggagtgcagagagctg
ttctggggagaccctgaagtcaaatgcaacgcatgtgactgtgacccacgaggcatcgct
gagcaacagtgcaacaaggccaacggtcactgcgtgtgcgtggagggcgtgtctggtccc
cgctgtgacgtctgcacccgcggctactctggcaccttcccctactgcgaacgctgccac
cagtgcttcgccgactgggacgtggtcgtgggtcagctgaccaaccagacccacaggctg
gtcaacaaggtgaacaccatcaaggccagcggcatcaccggaccctacaaacacaccata
gataacatggagcagagcgccggggccataagaactatcctggcccagaacccggctaca
gagccactgtcagaaatacagcagctactggagcaggccacagatctaatggaagagatg
agcaacaagctgaacctcactgaggaggcgctggcccaggtatcatctgatgacaacagc
accaacaccaaactggactctctcaaagaggacgcccagaagctagatcgcaccgtcaag
gagctgctggaccaagtggagttcatcaagaacactgacgttcggggagcgacagacagt
gtcaccaagtactaccagcagtctctggctgcagatgctcgcgccaacgcctccaccagt
ggcccaggcaaccctgtggagagctccgccattttacggcaagccacagaggacaagatg
aacgacaccagggaggagttccacaggaggcagggaaaacacgccaagagactggatgac
ctggcagggcagctggagacactggacctatcagaactcagcgagaagacgtgtggtagc
ccagctgatgaggcatgtgtggactctccgtgcggggggctgagctgtgtggattccgag
gggaacaggaggtgcggtggcgaggggtgcgatggtctggtcaccctggccaacaacgcc
tggcagaaggccaaggactttgaccaagagatcctcacggccatggaggaagtggacaag
ctcgccaagatggtgtcggaagccaaggtgaaggcggatgaggctaagctgagtgcccag
aacgtgctgctgaagaccaatggtaccaagcagcgtgtggaccagagcaacgaggagctg
cgcagcctcatccgacagatcagagacttcctcacacaggatgcagcggacctggcgagc
attgaggcagtggccaacgaggtgctggccatgcagatgcccaccacgccagcccagctc
caaaacctgacagacgagatcagggagagagtggaagacctgtcccacgtggagaccatc
cttaaccagagctccgacgacatccagagagccgatagcctactggagcaggcacgcaga
gccagtaaagaggcgaccgatgtgagggacacagcagagatggtgaagcaggttctggag
gaggctgagcgtgcccagagcgcagcggtcaaggccatcaaacaggccaccaccgacatc
aaaggcaccaatgacctcctgacctcagtggagtcggagacagcggactcagagtacaag
ctgaacaacgccacccagaggctgctgtggttagagcgagacgtcatgctgctcagagag
aaggcactgaacacctcactcagctctgaacaaactgagaaagacgcagagagaatcaac
aaagtggctgagcaggtcaaaaaggacctagactcggagctgaaggataagtatagcacc
gtggaagacctgatcacgcagaaggccgggggcgtggccaacgccaagaagagggcggag
cttctacagcaggaagccaaagacctgctgctacaggccagcgacaagctgcagctactg
aaagatttagaaaagtcatatgatgacaaccagaagactctggaagacaaggccaaccag
ttggtggatctggagaagtcaatcaaagagctgctgcaggagatcagtcacaaagtcact
gtctacagcacctgtctgttttaa
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