Coregonus clupeaformis (lake whitefish): 121576901
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Entry
121576901 CDS
T08357
Name
(RefSeq) laminin subunit beta-4 isoform X1
KO
K06245
laminin, beta 4
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121576901
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121576901
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
LAMININ_IV_B
LAMB1
EGF_LMN_ATRN
LAMB4
Fzo_mitofusin
Shugoshin_N
DUF7652
Motif
Other DBs
NCBI-GeneID:
121576901
NCBI-ProteinID:
XP_041746392
LinkDB
All DBs
Position
11:46027767..46091622
Genome browser
AA seq
1788 aa
AA seq
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MVSLFLLMLLVPGALLQEDCDVNSCHPQLGDLMVGRAAQLSASSTCGRNRPQNYCILGYL
EDEQKCFSCDSRQPYNLYNNQDSHQIENVITNFGPERKMKWWQSENGVHQVSIRLDLETL
FQFSHLVLTFKSFRPAAMLVERSKDYGHSWKVFRYFSEDCASHFPWVSQGPADSIDDVIC
DSRYSASEPSTDGEVVLKALDPSFDIENPYAPHIQEQITLTNLRVNFTHLFTLGDTLLAR
KKRNPQEKYYYALYEMVVRGSCFCNGHASMCMPVDGTRGDVLNERGMIHGRCVCQHNTVG
TNCERCQDFYNDVPWRPAGQTDPHVCRRCNCHGHSETCHFDIDQYQASGGVSGGVCDNCR
HDRMGPQCERCRPYLYQDPQLSMEDPRGCIPCDCDPTGSLDNGLCDPVSGRCVCKENVAG
DRCDRCKFGFYGFSQADPTGCQRCRCNFLGSVLTPYPCDQLTGQCVCQRLATGPLCDQCL
PGYWGLGNTVHTCSPCDCDHGGAYSSTCSSVDGQCQCLPNMVGRSCGDPAPGHFLAALDY
YLYEAENAAPLEGKNSSSLFKPTDMPVCEEYYRQQGYDLKYQNGRLVLTRRSKRRARRRR
QGQRSIRLDPGSALQIVPRERTPDVPITWTGPGFVRVLDGAGLRFTVDNLPATLDYHLVI
RYEPESPDDWMASVSIVPLLAGDGGCPTNPTGEKTLTIPGAARVAILDTPVCLNAGGRYY
VDITFRKQPNSNPQSSSHTLIDSMGLIPKMESVQDFCSQSELDSFRRFRCVELAAEQEIL
PDVCKGLIGSLSARIHNGAMLCRCNIQGSHGPSCSKFGGLCECKANVVGRCCDSCAPMNF
GFGPNGCAPCECDPRGAVAELCDQVRGQCPCRMEVGGRRCDRCLPGYYSFPLCRPCDCNG
LAELCDQDTGACLDCREHSTGYKCERCVEGYFGDPVSREPCEPCLCPDTQSSGRFFASTC
NKDPESGSLTCDCLTGHTGLFCDACSAGFYSGLTKPGGGCVECLCNNNIDPADSDACDSV
TGECLRCLHNTQGPNCQSCRPGYYGDALAQDCKECSCDRQGTDVTQCPLGSPCFCDPLTG
QCPCRAGAVGTLCDECANGFWNIQGESGCQPCKCDPANSFNNHCDKVTGQCQCHTEFGGR
QCDECGENHFGNPDLQCVSCDCNMEGTDRPACDPLTGECLCRIGVMGIFCDECAPGYDQV
FPACTPCHPCAVLWADNVTDVHRAAQRMRTFIPHHSEQLESGHSRQWQRMLEMHSKLDYL
VNLTESSLPRVKDVEKLSVRISKLKDTIDPNAIIMDSSSLLNTEIDNIHHEFKMLLDNLR
NKISEVPTLDPKEMQEALEKIRKLHADFMAEEKKVKDAERALENSMDTRQEVKDHLSSCI
ILGDMEVLEKNVKALSVAKLNKNICGAPGDEECSKSECGGALCRDFLGQRECGGPTCKGS
VPVSHNATETAEQVENDLIDLLQKLGDSKIKINEAKQMTQGTHEQAEKLQKKITDSKKKF
NREKNDTKDLINRVKDYLTDDMVAPEDIENLVNAVLAFQLPGSPDDIRSMIQNIRGVLTN
FTEFKEDLKKLKDQAKTAQDLLEKAQDIRDRTKGIDVTDIKKTMADTENTQDKVEQDLEK
AKESNGMADQMIKEIEKKLNNIETNLNSTRTPEMLEEIEALKNKTEMNREQAEQAKADAD
AALGTATDAEKGLDKVNVLFDKLKNGNINQGNNEVANERLKNITMEAEKIAKYVQDQIQQ
IDDLEKKIQDLIRNKEDKAKEVAMLLETVEALQKEIAARVDGYINCTS
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atggtttctctgttcctgctcatgttgctggtgcctggggccctcctccaggaagactgt
gatgtgaactcttgccacccccagctgggggacctgatggtaggccgcgctgcccagctc
tcagcctcctccacctgtggacggaacaggccccagaactactgcattctcggatacctg
gaggatgagcagaagtgtttcagctgtgattccaggcagccctacaacctctacaacaac
caagacagccaccagattgagaacgtcatcaccaactttggccctgagcgcaaaatgaag
tggtggcagtctgagaacggggttcatcaagtcagtatccggctggatctggagactctt
ttccagttcagccatctggtcctcactttcaagagtttccgtcctgccgccatgttggtg
gagaggtccaaagactacgggcacagttggaaggtgttccgctacttttcagaggactgt
gcctcccacttcccttgggtctcgcaagggccggctgacagcatcgatgatgtcatctgt
gacagcagatactcagcctcagagccatctactgacggagaggtggtgttgaaggctcta
gatccaagttttgacatagagaacccatatgctccccatattcaagagcagatcaccttg
accaacctgcgggtcaacttcacccatttgttcaccctgggtgacaccctactggcgcgg
aagaagaggaaccctcaggagaagtactactatgccctgtacgaaatggtggtgcgcggc
agctgcttctgcaatggccatgccagcatgtgtatgcccgtggatggcacccgaggagat
gtcttaaatgagcgtggcatgattcacgggcgctgtgtatgccaacacaacactgtgggc
acaaactgtgagagatgccaggacttttacaatgatgtcccctggaggccggccggccaa
actgacccacatgtctgcagaaggtgtaactgtcacggtcattcggagacgtgtcacttc
gacatagaccagtaccaggccagtgggggggtcagcgggggtgtgtgtgacaactgccga
cacgaccgcatgggtccccagtgtgaacgctgccgaccctatctctaccaggacccccag
ctctccatggaagaccctcggggatgtatcccgtgtgactgtgatccgacggggtccctg
gataacggcctgtgtgaccccgtgtcgggccgctgcgtgtgtaaagagaacgtggcaggg
gacaggtgtgatcgctgtaaatttggcttctacgggttcagccaggcggaccccactggc
tgccagaggtgcaggtgtaacttcctgggtagtgtcctgaccccctacccatgtgaccag
ttgacaggccagtgtgtatgtcagcgcctcgccacgggacccctgtgtgaccaatgtctg
ccaggttactggggtctggggaacactgtacacacctgctcaccttgtgactgtgaccat
ggaggagcctacagcagcacgtgctcctcagtggacggccagtgtcagtgcctgcccaac
atggtgggccggagctgtggtgatcctgctcctggacatttccttgctgctctggactac
tacctgtacgaggcagagaacgctgccccactggagggaaaaaactcctcctctctgttt
aaacccacagacatgcctgtgtgtgaggaatactacagacagcagggctatgacctcaaa
tatcaaaatggccgcttggtcctgaccaggagaagcaagagacgagccaggaggagaaga
cagggacagaggtccattcgcctggacccaggctcagcgctccagattgtgccccgggag
aggaccccagatgtaccaatcacttggaccggcccaggattcgtgcgggtcctggatggt
gcggggcttaggttcactgtggacaacctcccagcaacccttgactaccatctagtcatc
cgctatgaaccagagtcgccagatgactggatggcctctgtgagcattgttccattattg
gctggtgatggaggatgtcccactaacccgacaggggagaaaacactcaccatacctggg
gctgccagggttgccattttggatacgcctgtgtgtctgaacgcaggaggaagatattat
gtggacatcacttttaggaagcagcccaactctaaccctcagtccagctcacataccctc
atcgactcaatgggtctgatccctaagatggagtctgtgcaggacttctgttcgcagagt
gagctggactcgttcagaagattccgctgtgttgagttggctgctgagcaggagatcctg
cctgatgtgtgtaagggcctcatcggaagcctgtcggcccgcatacacaacggagccatg
ctttgcaggtgtaacatccagggttctcatggcccctcctgcagtaaattcggagggctc
tgtgagtgcaaggccaatgtggttggccgctgctgtgactcctgcgcccccatgaacttc
ggcttcggacccaacggctgtgcaccgtgtgagtgtgaccctcgcggtgcggtggcggag
ctgtgtgaccaggtcagaggtcagtgtccgtgtcgtatggaggtgggtgggcgacgctgt
gaccgttgcctgccggggtactacagcttccccctgtgtcggccctgtgactgcaacggc
ctggctgaactgtgtgaccaggacactggagcctgcctggactgcagggagcactccacc
ggatacaaatgtgagaggtgtgtggagggttactttggtgacccagtctccagggagccc
tgtgagccttgtctgtgtcctgacactcagtccagtggacggttcttcgccagcacctgc
aacaaggacccagagtctggtagcctgacctgtgactgcctgactggacacacaggtctc
ttctgtgatgcctgctctgctggtttctacagtggcctgaccaagccgggtggcggctgc
gtggagtgtctctgtaacaacaacatcgaccctgctgacagtgacgcgtgtgacagtgtg
acgggcgagtgtttgcgttgcctccacaacacccagggacccaactgtcagagctgtagg
cctggctactatggagacgcactggcccaggactgcaaagagtgctcctgtgaccggcag
gggacggatgtgacccagtgccctctgggcagcccgtgtttctgtgacccgctgacaggt
cagtgcccgtgtcgggcaggcgcggtgggaacgctgtgtgacgagtgtgccaacggcttc
tggaacattcagggagagtccgggtgccaaccatgcaaatgtgatcctgctaactccttc
aataaccactgtgacaaggtgactggtcagtgccagtgtcatactgagtttggaggcaga
cagtgtgatgagtgtggggagaatcactttgggaaccctgacctgcagtgtgtctcctgt
gattgtaacatggagggtaccgaccgccccgcctgtgacccattgactggtgagtgtctg
tgccgcattggtgtgatgggcatcttctgtgacgagtgtgcccctgggtatgaccaagtc
ttccccgcctgcaccccgtgccacccctgtgccgtcctgtgggcggacaacgtcaccgat
gtccaccgtgccgcccagaggatgcgcaccttcatccctcaccacagcgagcagctagaa
tctggacacagtcgtcagtggcaacgaatgctggagatgcactccaagctggactatttg
gtgaacctgacagagagctctttacctcgggtgaaagacgtggagaagctgtctgtcaga
atctcgaagctcaaagacacaatagaccccaacgccatcatcatggactcatcatctctt
ctgaacactgagatcgacaacatccaccatgagttcaagatgctgttggataacttaagg
aacaaaatcagcgaggtgccaacactagatccaaaggaaatgcaggaggccctggagaag
atccggaagctgcatgcagacttcatggctgaagagaagaaggtgaaggatgccgagagg
gccctggagaactccatggacacacggcaggaggtcaaagaccatctgtccagctgcatc
atcttgggagacatggaggtgctggagaagaatgtcaaggctctgagtgtggccaaactc
aacaaaaacatctgtggagcgccaggcgatgaggaatgctctaaatcagagtgtgggggt
gcgctgtgtcgagacttcctgggacagagagaatgtgggggtcctacatgcaagggcagc
gtccctgtgagccacaacgccacagaaacagctgagcaagtagagaatgaccttatcgac
ctgctccaaaaactaggggactccaagatcaagatcaatgaggccaaacagatgacccaa
ggcacccatgagcaggcagagaagctacagaagaagatcactgacagcaagaagaagttt
aacagggagaagaacgacaccaaggacctcatcaatagggtcaaagactacctcacagat
gatatggtggcaccagaggacatagagaatttggtcaatgctgttctggccttccagctg
ccgggctctccggacgacatccgctccatgatccagaacatccggggcgtgctgaccaac
ttcactgagttcaaggaggatctgaaaaaactgaaggaccaagccaagacagcccaggac
ctgctggagaaagctcaagatatcagggacagaaccaagggtattgatgttacggatatc
aagaaaaccatggcggacactgagaatacacaggacaaggttgagcaagacctggagaag
gctaaggaaagcaatggcatggcggaccagatgattaaagagattgagaagaaactgaac
aacatagagactaacttgaactctactagaactccagagatgctggaggagattgaggct
ctgaagaacaagacagagatgaacagagagcaggcggaacaggccaaagctgatgcagat
gcagccctaggtaccgctactgacgcagagaaggggcttgacaaggtgaatgtgctgttt
gataagctaaagaatggaaacataaaccagggcaataatgaagtggccaacgaacgcctg
aagaacattactatggaggcagagaaaatcgcaaaatacgttcaagatcaaattcaacaa
attgacgacttggagaaaaagatccaagacttaatcagaaacaaagaggacaaggccaag
gaggttgccatgttgctggagacggtagaagccctccaaaaggagattgctgcacgtgtg
gatgggtacattaactgtacctcctaa
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