Coregonus clupeaformis (lake whitefish): 121577002
Help
Entry
121577002 CDS
T08357
Name
(RefSeq) LIM domain-binding protein 3
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
121577002
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
121577002
Domain-containing proteins not elsewhere classified [BR:
cclu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
121577002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIM
DUF4749
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
121577002
NCBI-ProteinID:
XP_045062025
LinkDB
All DBs
Position
1:48871427..48945857
Genome browser
AA seq
864 aa
AA seq
DB search
MSTYNISLSGPAPWGFRLQGGKDFNMPLTISRITPGSKAQQGNLIQGDIIVAIDGVSTEG
MTHLEAQNKIKCASFNLALTMQKSKRPALQSATPRIDSPMQQIPHQKVIFNTPANNEYVP
NFNPNVLKDTALSTHKPIEVKGPGGKATIIHAQYNTPISMYSQDAIMDAIAGQSQSKGHE
GGSLPVKDAQVDSASPVYQAVIKTADRDMELNDWARSSSQVQSKSFRLLAHITGTEFMQD
PDVEHLRKSREKFDTEFKGPRFAKLKNWHNGLSAQILNVPEKALTHSPTWAVGIYDFRPQ
TADGFLSMQPNLLCSSPVEHAPVSISPAPVALPASAASPNQVASPAASQSPEPAPVAPES
EQPPPDTQTQPVAPEAPAIPSGGPRHLTHAASHISSALITQSRNKVYKQGPPPTSALEAL
SITPVFRTSTLPKRKRTLPSGKPKHLSSYSLQQSASGYSSQHKSSVSSQYGQAPPMQQAP
PMYQGQSMYQGPPMQQGPPMYQGPPMQQGPPMYQGPPIHQAPPMQQPPMQQPPHMQQPPY
MQQPPHMQQSSIQIPVGPPPPKVVSTACIVPAPAPAPVPPQAAAQATPEPPSSRPPWITD
DSFANKFDPSKTTSTSRKVPALPQSAPPAPAYIPNPGSAHTPHSAPSPAYNPSPAPYNPT
PAPFNPVARGVAQRAERFAANSNRAPLCGACNNMIRGPFLVALGRSWHPEEFNCHYCHTS
LADCSFVEEQNAVYCENCYGEFFAPTCARCNTKIMGEVMHALRQTWHTTCFVCAACGKAF
GNSLFHMEDGEPYCEKDYISLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFVCAVCNLN
LEGQPFYSKKDKPLCKKHAHAINV
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctacaacatttctctgagtgggccggccccatggggcttccgattgcaggga
gggaaggacttcaacatgcccctgaccatctccaggatcacccctgggagcaaggcacag
cagggcaacctgatccagggtgacatcatcgtggccatcgatggggtcagcactgagggc
atgacccacctggaggcccagaacaagatcaagtgtgccagctttaacctggccctcacc
atgcagaaatcaaagcgcccagctttgcaaagcgccaccccaagaatcgactctcccatg
caacagatccctcaccagaaggttattttcaacactcctgccaacaacgagtacgtcccc
aacttcaaccccaatgtgctgaaggacactgccctgtccacccacaagcccatcgaggtg
aagggtcctgggggcaaggccaccatcatccatgcccagtacaacacccccattagcatg
tactcccaggacgccatcatggacgccatcgccggacagtcccagtccaagggccacgag
ggcggttcgctcccagttaaagacgctcaggtagacagtgcctccccagtgtatcaggct
gtcatcaagactgcagacagggacatggagttgaatgactgggcccgcagctcctcccag
gtgcagtccaagtccttccgcctcctcgcccacatcacgggaacggagttcatgcaagac
ccagacgtggaacatctgaggaaatcaagggaaaagtttgacacagaatttaaaggccca
cgttttgcaaaattgaaaaattggcacaatggcctgtctgctcaaatccttaacgtgcca
gaaaaagccctgacacacagccctacatgggctgttggtatatatgattttcggcctcag
actgctgacggttttctctcaatgcaacctaacctcttatgcagtagccctgttgagcat
gctccagtctccatcagccccgcacctgtcgctctgcctgctagcgctgcttcgcccaat
caggtggcttcacctgctgcttcgcagtctccagagcccgcccccgtagcccctgagagc
gagcagccacccccagacacccagacacagccagtggcccctgaggcccctgcaattccc
tctgggggaccccgccacctgacgcatgcagcctcccatatctcgtctgctctgattaca
cagtctagaaacaaggtttataagcaagggccaccgcccacctctgcactggaggctctg
tcaatcaccccagtgttccgaaccagcactttgcccaaacgaaagcgcaccctgccctct
gggaaacccaagcacctgagcagctacagcctgcagcagtctgcctctggttacagctcc
cagcacaaatcctcagtctccagccaatatggccaggctccccccatgcaacaagcccct
cccatgtaccaggggcaatccatgtaccaggggcctcctatgcagcagggacctcccatg
taccaagggcctcccatgcagcagggacctcccatgtaccaggggccccccatccaccag
gctccgcctatgcagcaacctcccatgcagcagcctccccacatgcagcagcctccctac
atgcagcagcctcctcacatgcagcaaagctccatccagatccctgtgggccctccccca
cccaaggtggtcagcaccgcctgcatcgtgccagctccagcccctgcccctgttccaccc
caagccgcagcccaggccacccctgaacccccctccagcaggcccccctggattactgac
gactcttttgccaataaatttgaccccagcaagaccaccagcaccagcaggaaagtgcct
gctctacctcagagtgccccaccagcaccggcctacatcccaaaccctggctctgcccac
acccctcactctgccccaagccctgcctataaccccagccctgccccatacaaccccact
cctgcccctttcaatcccgttgcccggggtgtggcccaaagggcggagcgcttcgctgcc
aacagcaacagagcacccctctgtggggcctgcaacaacatgatcaggggacccttcctg
gtggccttgggtcgctcctggcacccagaggagttcaactgtcactactgccacacatcg
cttgcagactgcagctttgtggaggagcagaacgcagtatactgtgagaactgctacgga
gagttctttgcccccacctgtgcccgctgcaacaccaagatcatgggggaggtaatgcat
gctctgcggcagacatggcacaccacctgctttgtgtgtgctgcctgtggcaaggccttt
ggaaatagcctcttccacatggaggatggggagccctactgcgagaaagattacatttca
ctcttcagcaccaagtgccatggctgtgactttccagtagaagctggagacaagttcatt
gaagcactgggtcatacctggcacgatacctgctttgtctgtgcggtgtgcaatttgaac
ctggagggccagcccttctactccaagaaggacaagcccctgtgcaagaagcatgctcac
gcaatcaacgtgtag
DBGET
integrated database retrieval system