Coregonus clupeaformis (lake whitefish): 121577401
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Entry
121577401 CDS
T08357
Symbol
si:ch211-79m20.1
Name
(RefSeq) putative uncharacterized protein DDB_G0291608 isoform X1
KO
K17386
platelet-derived growth factor subunit B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04510
Focal adhesion
cclu04540
Gap junction
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121577401 (si:ch211-79m20.1)
04020 Calcium signaling pathway
121577401 (si:ch211-79m20.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121577401 (si:ch211-79m20.1)
04540 Gap junction
121577401 (si:ch211-79m20.1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
121577401 (si:ch211-79m20.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
cclu04052
]
121577401 (si:ch211-79m20.1)
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121577401 (si:ch211-79m20.1)
Cytokines and neuropeptides [BR:
cclu04052
]
Cytokines
Growth factors (RTK binding)
121577401 (si:ch211-79m20.1)
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Growth factors/receptors
121577401 (si:ch211-79m20.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
121577401
NCBI-ProteinID:
XP_045072898
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MSSWVLLLLAAVAAECLRFGSAEGDPLPPSLVELVRTSPISSIEDLQQLLEQETDSQEVE
PDDPSASEIHLNYTHGRYRRNLVDAQPAQQAVCKVRTEVMEVTRAMLDRRNANFLLWPPC
VEVQRCSGCCNTRMLQCVPTVTQTRYLQVTRIQYIDKRAHYDKAVISVEDHASCRCQTHP
SAAAAVAAAAARSTSLVRSTLPPPPPRLTPKPPSLAKEDVHRHDDMKANQRFHVDDRGQL
ERQWQNKYTVSHTQPGTHTLVGTGLGRHTLAGTHTQTHPMAGAGTQVGTHTQVGTHTDTH
TKTGPSSETPIGHGSGYEVGRGEERGSHTDTHTDTQPNTGDRQRSDNTERTQEIERQQQL
QQYYQQQQQQQYLQQQQQYQQQQQQQHQQQYQHQHQHQQQQQHQQQQYQPYSQQPELRTQ
YKHNAPQSDSGGPPDTKQPVNHKPELDHSNTEPTDDKDSSTEVANRDAQKDTEVTSQRQA
ATEVTNHNKENNKERHSQTELSSQEQRHSESTHHKHRGSELTNQGGSVTEEERRKKLLEL
VQRELDQKQQHRPPHPHLPHQSQTQTTTTQRPVLPTLSPSRAPGRSPSTPSPPPKRPQGP
LRPALPRGRRRRKHRSRISKAALRTMIM
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgtgggtcctgctgctgctggctgcggtcgcggcggagtgtctgcggtttggt
agcgctgagggagatcctctgcctccatcgttagtagagctggtgaggaccagtcctatc
tcttctatagaggacctgcaacagctgctggagcaggagactgactcccaggaggtggag
ccagatgacccatcggccagtgagattcatttaaattacacccatggaagatataggaga
aacctagtagatgcccagccagcccagcaggcagtgtgtaaggtcaggacagaggtcatg
gaggtcaccagagccatgcttgaccgacgtaacgccaacttcctgttgtggccgccatgt
gttgaggtgcagcgctgctctggctgctgtaacaccagaatgctacagtgtgtccccacg
gttactcagacacgatatctacaggtaacaaggatccagtacatcgataagagagcccac
tacgacaaggcggtgatctcagtggaagaccatgcctcctgccgctgccagacacacccc
tcagccgcagctgcagttgctgcggctgcagccaggtccacctccttggtcaggagcacc
ctcccccctcctcccccccgactcacccccaaacccccctccctcgccaaggaggatgtc
catcgccatgatgacatgaaggccaatcagaggttccatgtggatgacaggggtcagcta
gagagacagtggcagaacaagtacacggtgtcacacacacagccaggcacacacactctg
gtggggaccgggcttgggagacacacactcgcagggacacacacacagacacacccaatg
gcaggggcagggacgcaggtagggacacacacacaggtagggacacacacagacacacac
acaaagacgggtccctcttctgagacccctatagggcatggcagtgggtatgaggtgggg
agaggggaggagagagggtcacacaccgacacacacaccgacacacagcccaacacagga
gacaggcagcgcagtgacaacacagagaggacacaggagatagaaagacagcaacagcta
caacagtactaccaacagcaacaacaacaacaatatctacaacaacagcaacaatatcaa
cagcaacaacaacaacaacatcaacaacaatatcaacatcaacatcaacatcaacaacaa
cagcaacatcaacaacagcaataccagccatacagccaacagccagagctcaggactcaa
tacaaacacaacgcaccccaatccgatagcggtggaccacctgacacaaaacaaccggtc
aatcacaaaccagaactggaccacagcaacacagaaccgaccgatgataaagactcaagc
acagaggtggccaatagagacgcacaaaaggatacagaggtcaccagtcagagacaggca
gcgacagaagtgaccaatcacaacaaggagaacaataaagagcgacacagccagacagag
ctgtccagtcaggaacaaagacactcagagtccacccatcacaaacacagaggctcagag
ttgaccaatcagggaggctctgtcacagaggaggagaggaggaagaaacttctagaactc
gtacagagagaactagaccagaaacaacagcatcgtcctcctcatcctcatcttcctcat
cagtctcaaacacaaaccaccaccacacaaagaccagtgctccccacattgtcccccagc
agggccccagggcggtcccccagcaccccgtcccctccccccaagcgcccccagggcccg
ttgagaccggcccttccccgcggacgcaggaggaggaaacaccggagccgcatcagcaag
gctgccctccgaaccatgatcatgtag
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integrated database retrieval system
