Coregonus clupeaformis (lake whitefish): 121577401
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Entry
121577401 CDS
T08357
Symbol
si:ch211-79m20.1
Name
(RefSeq) putative uncharacterized protein DDB_G0291608 isoform X1
KO
K17386
platelet-derived growth factor subunit B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04510
Focal adhesion
cclu04518
Integrin signaling
cclu04540
Gap junction
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121577401 (si:ch211-79m20.1)
04020 Calcium signaling pathway
121577401 (si:ch211-79m20.1)
09133 Signaling molecules and interaction
04518 Integrin signaling
121577401 (si:ch211-79m20.1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121577401 (si:ch211-79m20.1)
04540 Gap junction
121577401 (si:ch211-79m20.1)
09142 Cell motility
04810 Regulation of actin cytoskeleton
121577401 (si:ch211-79m20.1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04052 Cytokines and neuropeptides [BR:
cclu04052
]
121577401 (si:ch211-79m20.1)
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121577401 (si:ch211-79m20.1)
Cytokines and neuropeptides [BR:
cclu04052
]
Cytokines
Growth factors (RTK binding)
121577401 (si:ch211-79m20.1)
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Growth factors/receptors
121577401 (si:ch211-79m20.1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDGF
PDGF_N
Motif
Other DBs
NCBI-GeneID:
121577401
NCBI-ProteinID:
XP_045072898
LinkDB
All DBs
Position
Unknown
AA seq
628 aa
AA seq
DB search
MSSWVLLLLAAVAAECLRFGSAEGDPLPPSLVELVRTSPISSIEDLQQLLEQETDSQEVE
PDDPSASEIHLNYTHGRYRRNLVDAQPAQQAVCKVRTEVMEVTRAMLDRRNANFLLWPPC
VEVQRCSGCCNTRMLQCVPTVTQTRYLQVTRIQYIDKRAHYDKAVISVEDHASCRCQTHP
SAAAAVAAAAARSTSLVRSTLPPPPPRLTPKPPSLAKEDVHRHDDMKANQRFHVDDRGQL
ERQWQNKYTVSHTQPGTHTLVGTGLGRHTLAGTHTQTHPMAGAGTQVGTHTQVGTHTDTH
TKTGPSSETPIGHGSGYEVGRGEERGSHTDTHTDTQPNTGDRQRSDNTERTQEIERQQQL
QQYYQQQQQQQYLQQQQQYQQQQQQQHQQQYQHQHQHQQQQQHQQQQYQPYSQQPELRTQ
YKHNAPQSDSGGPPDTKQPVNHKPELDHSNTEPTDDKDSSTEVANRDAQKDTEVTSQRQA
ATEVTNHNKENNKERHSQTELSSQEQRHSESTHHKHRGSELTNQGGSVTEEERRKKLLEL
VQRELDQKQQHRPPHPHLPHQSQTQTTTTQRPVLPTLSPSRAPGRSPSTPSPPPKRPQGP
LRPALPRGRRRRKHRSRISKAALRTMIM
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgtgggtcctgctgctgctggctgcggtcgcggcggagtgtctgcggtttggt
agcgctgagggagatcctctgcctccatcgttagtagagctggtgaggaccagtcctatc
tcttctatagaggacctgcaacagctgctggagcaggagactgactcccaggaggtggag
ccagatgacccatcggccagtgagattcatttaaattacacccatggaagatataggaga
aacctagtagatgcccagccagcccagcaggcagtgtgtaaggtcaggacagaggtcatg
gaggtcaccagagccatgcttgaccgacgtaacgccaacttcctgttgtggccgccatgt
gttgaggtgcagcgctgctctggctgctgtaacaccagaatgctacagtgtgtccccacg
gttactcagacacgatatctacaggtaacaaggatccagtacatcgataagagagcccac
tacgacaaggcggtgatctcagtggaagaccatgcctcctgccgctgccagacacacccc
tcagccgcagctgcagttgctgcggctgcagccaggtccacctccttggtcaggagcacc
ctcccccctcctcccccccgactcacccccaaacccccctccctcgccaaggaggatgtc
catcgccatgatgacatgaaggccaatcagaggttccatgtggatgacaggggtcagcta
gagagacagtggcagaacaagtacacggtgtcacacacacagccaggcacacacactctg
gtggggaccgggcttgggagacacacactcgcagggacacacacacagacacacccaatg
gcaggggcagggacgcaggtagggacacacacacaggtagggacacacacagacacacac
acaaagacgggtccctcttctgagacccctatagggcatggcagtgggtatgaggtgggg
agaggggaggagagagggtcacacaccgacacacacaccgacacacagcccaacacagga
gacaggcagcgcagtgacaacacagagaggacacaggagatagaaagacagcaacagcta
caacagtactaccaacagcaacaacaacaacaatatctacaacaacagcaacaatatcaa
cagcaacaacaacaacaacatcaacaacaatatcaacatcaacatcaacatcaacaacaa
cagcaacatcaacaacagcaataccagccatacagccaacagccagagctcaggactcaa
tacaaacacaacgcaccccaatccgatagcggtggaccacctgacacaaaacaaccggtc
aatcacaaaccagaactggaccacagcaacacagaaccgaccgatgataaagactcaagc
acagaggtggccaatagagacgcacaaaaggatacagaggtcaccagtcagagacaggca
gcgacagaagtgaccaatcacaacaaggagaacaataaagagcgacacagccagacagag
ctgtccagtcaggaacaaagacactcagagtccacccatcacaaacacagaggctcagag
ttgaccaatcagggaggctctgtcacagaggaggagaggaggaagaaacttctagaactc
gtacagagagaactagaccagaaacaacagcatcgtcctcctcatcctcatcttcctcat
cagtctcaaacacaaaccaccaccacacaaagaccagtgctccccacattgtcccccagc
agggccccagggcggtcccccagcaccccgtcccctccccccaagcgcccccagggcccg
ttgagaccggcccttccccgcggacgcaggaggaggaaacaccggagccgcatcagcaag
gctgccctccgaaccatgatcatgtag
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