Coregonus clupeaformis (lake whitefish): 121577627
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Entry
121577627 CDS
T08357
Name
(RefSeq) integrin beta-7-like
KO
K06590
integrin beta 7
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04514
Cell adhesion molecules
cclu04672
Intestinal immune network for IgA production
cclu04810
Regulation of actin cytoskeleton
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121577627
04514 Cell adhesion molecules
121577627
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121577627
09142 Cell motility
04820 Cytoskeleton in muscle cells
121577627
04810 Regulation of actin cytoskeleton
121577627
09150 Organismal Systems
09151 Immune system
04672 Intestinal immune network for IgA production
121577627
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121577627
04515 Cell adhesion molecules [BR:
cclu04515
]
121577627
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
121577627
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin beta subunits
121577627
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Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
EGF_integrin
EGF_2
EGF_Teneurin
EGF_TEN
I-EGF_1
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
121577627
NCBI-ProteinID:
XP_041747305
LinkDB
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Position
12:39501747..39514313
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AA seq
767 aa
AA seq
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MVGVFLLGTFLLYCVGQNQIQGVPQVCVSQPSCSACLRSPGCAWCKHKDFLKSGESTERR
CDTVESLRTRRCEQTDIINPQSELVFLKNNELSSNPDNVVQLKPQNLLFKLRVGVPQTFS
VSFKRAEGYPIDLYYLMDLSFSMRDDLETIKNLGQDILSTLKNVTKKVRIGFGSFVDKVA
LPYVSQVKDKKNNPCPSRLNTCQPAFSFQNILGLTQDVAEFKARVSNQIISGNLDSPEAG
FDAIVQAAVCQGVIGWNNVTRILVYTSDDTFHIAGDGRLAGIFEPHDGKCHLNGSGFYEG
TKYDYPSVGQLTRVLADNNIQLIFAVTEDSVAAYKALSKLIPQSVLGVLKNDSSNVVQLI
SEAYNNLSSTMLLEHHGAPSGLDVTYRSHCTPGEGDNTPWQRRGECMNIKLNQQVDFTVS
LNISTSDGECLKEKKQFFLKLQGISETLKVSVETLCDCDCHDREQQSTHCNEKGMITCGI
CSCDEGHLGQRCECEQPKDMISADSMDATCRQDNSSLLCSRHGSCECGICVCQGTHRGDF
CQCDDNSCARHNNMLCGGNGQCDCGTCKCHTNYTGSACDCSTRTDQCRTAGKLCNGQGTC
LCNQCQCNKDLFGMNCSKIANACPKFLACVTCELAIKESDGLKSNCSRPCGSVKPTWVEG
PQEFPCREDTISYKVELFPDGNILVLYADLPRSVDKTYVIIGSSVSSIIFISIAVILISR
LMLELHYRREYASFLKATETEVWKDTNNPLFQDATTTVMNPIHIQED
NT seq
2304 nt
NT seq
+upstream
nt +downstream
nt
atggttggcgtctttctattaggaacctttctcttgtactgtgtcggacagaaccaaatt
caaggggtcccccaagtatgtgtgtcccagccctcatgttcagcctgcctgaggagcccg
ggatgtgcctggtgcaaacacaaggacttcctgaagtctggggagtccactgagcggagg
tgtgacactgttgagtctcttaggaccaggcgctgtgagcagacagacatcatcaacccc
caatcagaactggtcttcctgaagaacaatgagctcagcagcaacccagacaacgtggtc
cagcttaagccacaaaacctcctcttcaaactcagagtcggagtccctcagaccttcagt
gtgtcattcaagagagccgagggctaccccatagacctgtactacctgatggacctgtcc
ttctccatgagggacgacctggaaaccatcaagaatctgggccaggacatcctctctact
ctgaaaaacgtaaccaagaaggtccgcataggctttggctcatttgtggacaaggtggct
ctgccgtacgtcagccaggttaaggacaagaagaacaacccctgccccagccgcttgaac
acctgtcaacctgccttcagcttccagaacattctgggattaacccaagatgtggcagag
ttcaaggccagggtcagcaaccagataatctctggaaacctggactcccccgaggctggc
tttgacgccatcgtgcaggcagctgtctgccagggtgtgattggttggaacaatgtcacc
cggatcctggtctacacgtcagatgacaccttccacattgccggggacggcaggctggct
gggatattcgagcctcatgatgggaagtgccatctcaatggcagcggcttttatgaaggc
actaaatatgactacccttcggttggccagctcaccagggtcctggcagacaataacatc
cagctcatctttgctgtcaccgaggacagtgttgctgcctacaaggcattgagtaaacta
atccctcagtcagtgctgggagtcctgaagaacgactccagcaacgtggtccagctcatc
tcagaggcctacaataacctgtcctccactatgttactggagcaccatggagctccttca
ggtctggacgtgacctacagatcccactgcacccctggagaaggggacaacaccccgtgg
cagaggaggggcgagtgcatgaacatcaagctcaaccagcaggttgacttcacagtgagt
ctgaatatttcaacgtctgacggagaatgtctgaaggagaagaagcagtttttcctcaaa
ctgcagggcatcagcgagaccctgaaggtctctgtggaaaccctgtgtgactgtgactgc
catgatagagaacagcagtccacacactgcaatgaaaagggaatgatcacctgcggaatc
tgcagctgtgacgagggtcacctgggtcagaggtgtgagtgtgagcaacctaaggacatg
atctctgccgactctatggacgcaacatgtcgccaagacaactcctcgctgctatgcagc
aggcacgggagctgtgagtgtggcatatgtgtgtgccagggcacccaccgcggtgatttc
tgccaatgtgatgacaacagctgtgcccgccacaacaacatgctctgcggtggtaatggg
cagtgtgactgcggaacatgtaagtgtcataccaactacacaggctctgcgtgtgactgc
tccacccgaaccgaccagtgcaggactgctgggaagctgtgcaatggccagggaacatgc
ctgtgtaaccagtgccagtgcaacaaagacttatttggcatgaactgctcaaagattgct
aatgcatgcccaaaattcctggcctgtgtgacgtgtgaattggccattaaggaaagtgac
ggcctaaagagtaactgcagccgaccatgtggctcagtcaagccgacttgggtggaggga
ccacaggagttcccctgcagagaagacaccatctcctacaaagtggagctgttccctgac
ggcaacatcctggtcctctacgcagatctgccccgctctgttgacaagacttacgtgatc
attggcagctcggtgtccagcatcatcttcatcagcatcgcagtgatcctcatcagtagg
ctgatgctggagctccactaccggagagagtacgccagcttcctcaaagcaacggagacc
gaagtctggaaagataccaacaatcccttgttccaggatgccacgaccacagttatgaac
cccatacacattcaagaggactga
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