Coregonus clupeaformis (lake whitefish): 121577720
Help
Entry
121577720 CDS
T08357
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5-like isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121577720
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121577720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
HDA2-3
ResIII
PHD-1st_NSD
PHDvar_NSD
HTH_CHD1_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
121577720
NCBI-ProteinID:
XP_041747470
LinkDB
All DBs
Position
12:complement(12106177..12140595)
Genome browser
AA seq
2056 aa
AA seq
DB search
MPGSLSNEDEGQEDMDFEDEIPDEDEEGQRNTAPLTPLDSFFTDNVALKQQKKKKPQKMK
EGKMPKVKKRKKEGGGGGGVGGGGSDLKDQASEREDDRPLQGPEIGSESESSTYALTTKK
KKKPKEKKEKKPKRKKREEEEDDEDDDDEDDENSKEPKSSSQLMQEWGLEDVQYGFTEED
YTTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTSATAVAAAVA
AAVETVTVASPISVKEITTLSSSQPGPIRKAKTKEGKGPGVRRKTKTVKEVKKKSKGKKT
KSKKKASSSEEDFALEESDFDDVSIHSASVRSDTSGNSKKKARKGRKKRKREDGDGYETD
HQDYCEVCQQGGEIILCDTCPKAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDDD
EEEEVAVEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMC
PPLKGKVQRILHWTWGDPPLPAEVPPGPDGETVDPLVKPPLKGHPERELFVKWAGLSYWH
CSWVSELQLELYHAVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRKSKDPQYAAMEERF
YRYGIKPEWMVIHRILNHSYDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYHNAKHSYW
DHREQMIGDDQRPLVVRKGKKGKEEEKRREREIPPNAPIIDPTIKFEHQPWYINATGGTL
HPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVSAPLST
IINWEREFEMWAPDFYVVTYTGDKESRAVIRENEFTFEDSAVKTGRKVFRMKKDTAIKFH
VLLTSYELITIDQTILGSINWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQ
NNLEELFHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNM
PSKTELIVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFP
VAAMEAPVLPNGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFL
EYEGYKYERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDS
DWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSK
TGSMSKQELDDILKFGTEELFKDEMEAAARAMGSHQKLCKNNGDIKDGDEGSVIHYDDNA
ISKLLDRSQNATEDTEIQNMNEYLSSFKVAQYVVKDEDAEEEPQREIIKQEENVDPDYWE
KLLRHHYEQQQEDLARNLGKGKRIRKQVNYNDTSQEDQEWQDDLSDNHSEYSVGSEDEDE
DFEERPEGGRRHSRRQLKSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPP
QDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTR
IGVMSLVRKKVQEFEHVNGKYSTPDLIPIGLELKKLTESLSSDPNTPVPASPAATPQPPG
TPVPPEKTDSISGPAEDKEPTEQECKKLPELETHVSTESFSQVEKTDIVPDSDETAKGST
EYKPVSSEESSEMKDTPSTLIEPSINPKEPPSKQTELSSNQSSPKAEPCRETEKSLDKGD
SDPAPAKPEEKELKPVVSDEAKSEDLLVPEGRLNGEKEAQEETEDVRKELLEKNGFKMRF
MFNIADGGFTELHTLWQNEERAAVSSGKMYDIWHRRHDYWLLAGIVTHGYARWQDIQNDP
RYAIHNEPFKTEMHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPSHPAM
ALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKGLSSPSVYTAAGLKHCLQTQDLVL
NQLEELLSDMKADVTRLPNMLSRIPPVSSRLQMSERSILSRLTSRGNEPPPQQPFSQGSF
ACSQMYSTGFGGSFRGTAGEAMVNYSQMPLGPYVSVSNGPPPPSSHLDKKSCDPLRDVTT
PDLKSGKPSDVICIED
NT seq
6171 nt
NT seq
+upstream
nt +downstream
nt
atgcctgggtcgttaagcaatgaagacgagggacaagaggacatggattttgaagacgaa
ataccagatgaggatgaggagggtcaacgtaacactgccccgctcacacctctggacagc
ttcttcactgacaacgtcgccctcaaacaacagaagaagaagaaaccccaaaagatgaag
gagggcaagatgcccaaagtcaagaagaggaaaaaggagggaggaggaggtggaggagta
ggaggtggtggcagtgacttgaaggatcaggcctcagagcgggaggatgaccgtccactg
cagggtccagagattggctcagagagcgagagcagcacctatgccctaaccacaaagaag
aagaagaaacctaaggagaagaaagagaagaaacccaaacggaaaaagagagaagaggag
gaggatgacgaagatgatgatgacgaagatgatgaaaatagtaaggagcccaagtcgtcc
agccagctgatgcaggagtggggtctggaggatgtgcagtatggcttcacagaggaggac
tatacaaccctcaccaactacaaggccttcagccagttcctcaggccacttattgccaag
aagaaccctaagatccccatgtcaaagatgatgacagtgttaggggccaagtggcgagag
ttcagcgctaacaaccccttcaaaggcacctctgcaactgctgtggctgccgcggtggct
gctgccgtggaaacggtcaccgtggcctcgcccatctctgtcaaagagatcaccacccta
tcaagctctcagcctgggccaatcagaaaagccaaaaccaaagagggaaaggggcctggg
gttcgacggaaaacaaagactgtaaaggaggtgaagaagaaaagtaaagggaagaagacc
aaatcaaagaagaaagcatcctcgagtgaggaggactttgcgctggaggagtcggacttt
gatgatgtcagcatccacagtgcctctgtgcgctctgatacctcggggaattccaagaag
aaagcccggaagggtcgaaaaaaaaggaaaagagaggatggggatggctatgagacagac
caccaggactactgtgaggtgtgccagcagggaggggagatcatcctgtgtgacacctgt
cccaaagcctaccacctggtgtgtctggaccccgagctggagaaagctcccgagggcaag
tggagctgcccccactgtgagaaagagggcatccagtgggaggccaaagatgatgacgat
gaggaggaggaggttgcggttgaggaagaggacgaccacctggagttctgtagagtgtgt
aaagacggaggggagctgctgtgctgtgacacctgcccctcctcctaccatatccactgc
ctcaaccctccactgcctgagatacccaatggggagtggctgtgcccacgctgcatgtgc
ccacctctgaaggggaaggtacagaggattctccactggacttggggggaccccccctta
ccagctgaggttccccctggccctgatggagagactgtggacccgctggtcaagcccccc
ctgaagggccacccggagagggagctgtttgtcaagtgggctggtctctcctactggcac
tgctcctgggtcagcgaactgcagttggagctgtaccatgcggtgatgtaccgtaactat
cagcgtaagaacgacatggatgagccccctccgtacgactacggctctggggaggaggag
ctgaacaatgagaagaggaagagtaaagatccgcagtacgctgccatggaggagagattc
taccgctacggcatcaagccagagtggatggtcatccacaggatcctcaaccacagttat
gataaggatggggatgtgcactacctgataaagtggagagacctgccctatgaccagtgc
acctgggaggtggatgactttgacgtccctgaatatcacaacgccaaacactcctattgg
gaccacagggagcagatgattggtgacgaccagcgccctttagtggtgagaaagggaaag
aagggcaaagaggaggagaagaggagggagagagaaatccctcctaacgctccaattata
gatcctaccatcaagtttgaacatcaaccctggtacatcaatgccactgggggaaccctg
cacccgtaccagctggaggggttgaactggctgcggttctcctgggcacagggcacagac
actatcctggcagacgagatgggcctgggcaagactgtccagaccatcgtgttcctctac
tcactctacaaggagggtcactccaaagggccatacctggtcagtgcccccctgtccacc
atcatcaactgggagagggaatttgagatgtgggccccagacttctacgtggtgacctac
actggggacaaagaaagccgggcggtcatcagggagaacgagttcacctttgaggacagt
gcagtcaaaacaggccgcaaggtcttccgtatgaagaaagacactgccatcaagttccat
gtgttgctgacgtcatatgagctaatcaccatcgatcagaccattctgggctccattaac
tgggcctgtctagtggtggatgaggcccacagactgaagaacaaccagtcaaagtttttc
agaatcctcaacgggtataagatctactataagctgctactgactggcactcctctgcag
aacaacctggaggagctgtttcacctgctcaacttcctcaccccagagagattcaataac
ctggagggcttcctagaggagtttgcagacatctccaaggaggaccagatcaagaagctg
catgacctgctgggcccacacatgctcaggagactgaaggctgacgtcttcaagaacatg
ccttccaaaacagagctcattgtacgagtggagctcagccccatgcagaagaagtactac
aagttcatcctgacacggaactttgaggcgctcaactccaagggcgggggcaaccaggtg
tccctgctcaacatcatgatggatctgaagaagtgctgcaaccacccctacctgttcccc
gtggcagccatggaggcaccagtgttacccaatggctcttacgatgggaaccagctggtg
aagtcctcaggcaaactcaccctgctccagaagatgctaaagaaactcaaagatgaagga
cacagagttctcatcttctcccagatgactaagatgctggatctgcttgaggactttctg
gaatacgagggctacaaatatgaacgcatcgatggaggcatcacaggggggctacgacag
gaggctatcgaccgctttaacgcaccgggcgctcagcagttctgcttcctgctctccacc
cgagctggaggcttgggcatcaacctggccacggcagacaccgtcatcatctatgactca
gactggaaccctcacaacgatatccaggcattcagcagggcccaccgtataggtcagaat
aagaaggtgatgatctatcgcttcgtgacacgagctagcgtggaggagcgcatcacccag
gtggccaagaggaagatgatgctgacccacctggtggtgaggcccggcctgggctccaag
accggctctatgtccaaacaggaactggacgacatcctcaagttcggcaccgaggagctc
ttcaaggacgagatggaggcagccgctcgggccatgggttcccatcaaaaactctgtaag
aataacggggacataaaggatggagatgaaggtagtgtaatccactatgatgacaatgcc
atctccaagctgctggaccgtagccagaatgctacggaggacactgagatccagaacatg
aacgaatacctcagctccttcaaggtggcccagtacgtggtcaaagacgaggacgcagag
gaggagccccagcgggagatcattaagcaggaggagaatgtggatccagactactgggag
aagctgctgaggcaccattatgagcagcaacaggaggacctggcacgcaacctgggcaaa
ggcaaacgcatccgcaagcaggtcaactacaacgacacgtctcaggaggaccaagagtgg
caggatgatctttcagacaatcattccgagtactccgtggggtccgaggacgaggacgaa
gatttcgaggagaggccggaaggtgggcgcaggcattctcgcaggcagctgaagagtgac
agggacaaacctctgccacccctgctggcacgcgtagggggcaacatcgaggtgctgggg
ttcaacgcccgtcagcggaaggccttcctcaacgccatcatgcgctggggaatgcctcct
caggacgccttcaactctcactggctggtcagagacctgagagggaagagtgagaaagag
ttcagggcctacgtgtctctgttcatgagacatctttgtgagccgggggcagacggggcg
gagacctttgcagacggggttccacgagaagggctgtcccgccagcatgtcctcaccagg
atcggggttatgtctctggtcaggaaaaaggtccaggagtttgagcatgtcaatgggaag
tacagcactccagacctgatccctattggactggagctgaagaaactgactgagagtctg
tcctctgaccccaacacccctgtccctgccagccctgcagccacaccccagcctcctgga
actcctgtcccaccagaaaagacggactcgatctcagggcctgctgaagacaaggagccc
acagaacaagagtgcaagaagctaccagaactggagactcatgttagtacagagtcgttt
tcccaggtagagaagacggacatcgttcctgacagtgatgagacagcgaagggcagcaca
gagtacaaaccagtctcctcagaggagagtagtgaaatgaaagacacaccctccacattg
atagagccatccatcaatcctaaagagcctccatccaaacagacagagctgtcgtccaat
caaagctcaccaaaagcggagccctgtcgagagacagagaagtccttagataaaggagac
agtgatcctgccccagccaaacctgaggagaaggaactgaagccagttgtttcagacgag
gccaagagcgaggacttgctagtgcccgagggacggctgaatggagaaaaagaagcacag
gaggagacggaggatgtcaggaaggaattactggagaagaatggtttcaagatgagattc
atgttcaacatcgccgacggaggcttcacagagctgcacaccctgtggcagaacgaggag
cgggctgccgtgtcatctgggaagatgtatgatatctggcaccgtcgccacgactactgg
ctactggctggcatcgtaacacatggctatgcccgctggcaggacattcagaacgaccca
cgctatgccatccacaatgagcccttcaagactgagatgcacaagggaaactaccttgag
atgaagaacaagttcctggctcgccgctttaagctgttggagcaggctctggtgatagag
gagcagttgaggagggcagcatacctgaatatgacccaggaccccagccacccggccatg
gccctgaacactcgctttgctgaggtggagtgtctggctgagtcccaccagcacctgtcc
aaggagtctctggccgggaacaagccagccaacgccgtgctgcacaaaggtctgtcatct
cccagtgtgtacacagcagcaggactaaaacactgtctacaaactcaagatctggtactg
aaccagctggaggagctgttaagtgacatgaaggcggatgtgacgcggcttcccaacatg
ttgtcccggatccccccagtgtcttctcgtctgcagatgtctgagaggagcatcctcagc
cgcctcaccagccgcggtaacgaacctccgccacaacagccgttcagccagggctcattt
gcctgttcccagatgtacagcactggttttgggggcagcttccggggaactgcaggagag
gccatggtcaactacagtcagatgcccctgggaccctacgtcagtgtgtccaacggcccc
ccacccccatccagccacttggacaagaagtcttgcgaccccctgagggacgtcaccacc
cctgacctcaagtcaggcaagcccagcgatgttatctgtattgaagattag
DBGET
integrated database retrieval system
