KEGG   Coregonus clupeaformis (lake whitefish): 121577849
Entry
121577849         CDS       T08357                                 
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1-like
  KO
K14406  cleavage stimulation factor subunit 1
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    121577849
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121577849
Messenger RNA biogenesis [BR:cclu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     121577849
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR3_1st WDR55 WD40_CDC20-Fz WD40_WDHD1_1st CSTF1_dimer Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd ANAPC4_WD40 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 Beta-prop_Aladin Frtz Beta-prop_IFT140_1st
Other DBs
NCBI-GeneID: 121577849
NCBI-ProteinID: XP_045070145
LinkDB
Position
Unknown
AA seq 406 aa
MYRPKPTLQDRQHLNRLIISQLLYDGHTNMANNLITEVKPQSVLSPSENLMQLAKIGMEN
DDSVVQYAIGRSDMEAPGVGIDLEFDADVQSMSPEASEYETCYVTSHKGPCRVATYSRDG
QLIATGSADASIKVLDTERMLAKSXPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAF
HPTEQILASGSRDYTLKLFDYSKPSAKRAFKHAQEAEMLRSISFHPSGDFLLVGTQHPTL
RLYDVNTFQCFVSCGSYVTCSKDGDGVSNRCVMTFDKAHDGAEVCSAVFSKNSKYVLSTG
KDSVAKLWEISTGRTLVKYTGAGLSGRQEHRTQGVFNHTEDYVLLPDERTVSLCCWDSRS
AERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDVFRARFWYRRSTTD
NT seq 1221 nt   +upstreamnt  +downstreamnt
atgtatcgtcccaaaccgacacttcaggaccgccagcaccttaaccggctgatcatcagc
cagctgttgtatgatggtcacaccaacatggctaacaacctgatcacagaggtcaagccg
caaagcgtcttgtcgccctcagaaaacctcatgcagctggccaagataggcatggagaat
gacgacagtgtggtgcagtatgccatcgggcggtctgacatggaggctccgggcgttggc
atcgacctggagtttgacgctgacgtccagagcatgtcccccgaggcgtctgagtacgag
acttgctacgtgacgtcccataaaggtccctgtcgcgtcgccacatacagccgggacggg
cagctcatcgctacgggctcggcagacgcctccatcaaagtcctggacacagaacgcatg
ctggccaagagcnngcccatagaggtgatgatgaatgagacggcccagcagaacatggag
aaccaccctgtgatcagaacactgtacgaccacgtggacgaggtcacgtgtctggcgttc
caccccacggaacagatcctggcatcagggtcacgtgactacaccctcaaactgttcgac
tactccaagccctctgccaagagggccttcaaacacgcacaggaagccgagatgctgcgg
tccatctctttccacccgtcaggcgacttcctgttggtgggaacgcagcacccgaccctc
cgcctctacgacgtcaacaccttccaatgcttcgtctcctgcggcagctacgtgacgtgc
agtaaggacggagacggcgtgtctaaccgctgtgtgatgacgtttgataaggctcatgac
ggggcggaggtctgctccgctgtcttctctaagaactccaagtacgtcctctccactggg
aaagactcggtcgccaaactctgggagatctccaccggacgcaccttggtcaaatacaca
ggtgctggtctgagtggtcgtcaggaacatcgtacccagggtgtcttcaaccacacagag
gactatgttctgttgcctgatgagaggaccgtctctctctgctgctgggactctcggtct
gcagagaggaagaaccttctgtccctgggtcacaacaacattgtccgctgtatcgtccac
tcccccaccaacccagggttcatgacctgtagtgatgtcttcagggctcgcttctggtac
agacgttctaccaccgactga

DBGET integrated database retrieval system