Coregonus clupeaformis (lake whitefish): 121577956
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Entry
121577956 CDS
T08357
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121577956
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121577956
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cclu00536
]
121577956
Glycosaminoglycan binding proteins [BR:
cclu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
121577956
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
121577956
NCBI-ProteinID:
XP_041747890
LinkDB
All DBs
Position
12:13351670..13418977
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AA seq
1493 aa
AA seq
DB search
MFSFVDSRTVLLLVATQVLLLAVVKCQDEDQDLGSCMQDGQRYSDKDIWKPEPCRICVCD
TGTVLCDEIICEELKDCPKPEIPFGECCPICVRDGDGEAPPSGRAPGSKGQKGEPGDITD
VVGPRGPGGPMGPSGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPG
LGGNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPG
SAGPLGPRGPPGPSGKPGDDGEAGKPGKGGERGASGPQGARGFPGTPGLPGIKGHRGYPG
LDGLKGESGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGSSGAAGARGNDGLPGPAG
PPGPVGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDG
IGGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEIG
PAGPQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERG
VGGVSGPKGAGGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPGGSAGEDGRPGPPGPMG
ARGQPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERG
EQGQPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQG
LQGPRGLPGTPGTDGPKGAIGPGGASGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKG
PEGASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAG
FAGPPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPG
ATGFPGAAGRVGPPGPNGNPGAAGPAGPSGKDGPKGVRGDGGPPGRQGDAGLRGAAGAPG
EKGDAGEDGPPGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSG
DRGPPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGATGIKGDRGNTGPVGAPGAPGGNG
APGPVGPTGKQGDRGEAGAQGPAGPSGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRG
FTGLQGLPGPPGQAGDQGASGPAGPSGSRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSG
ETGPSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQLEKSPDPLRYMRADQASGNLRTHDAE
VDATLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVY
CNMESGESCVYPKPASIPKKNWWSSKSKAAKHVWFGETMNGGFHFSYGDDSLAANTASIQ
MTFLRLLSTEASQNLTYHCKNSVAYKDGATGNLKKALLLQGSNDVEIRAEGNSRFTYSVM
EDGCTKHTGAWGKTVIDYRSQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4482 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcgaggactgtactgctactcgtagcaacccaagtccttcta
ttagccgttgtcaaatgtcaggatgaagaccaggatctaggtagctgtatgcaggacgga
cagcgctatagtgacaaggacatatggaaaccagagccgtgtcgtatttgtgtgtgtgac
acgggaactgtcctgtgtgacgaaataatctgcgaggagcttaaagactgccccaaaccc
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggacggggaagcccct
ccaagtggtcgggccccgggatctaagggacagaagggggaaccgggagatatcacagat
gtcgtaggacccagaggacctggaggccctatgggcccctctggagagcagggaccacgt
ggagacagaggagacaaaggcgataagggcagccccgggccccgtggcagagatggcgag
cctggtacccccggtaaccccggcccccccggacccccaggacctaacggacctcccggc
cttggaggaaactttgctgctcagatggctggaggattcgacgagaaggctggaggagca
cagatgggcgtgatgcaaggaccaatgggccctatgggtcctcgaggaccacctgggccg
tctggatctcctggcccacaaggtttccaaggcaaccccggagaggctggagagcccgga
tcagctggccccttgggtccccggggtccacctggaccctctggtaaacctggagatgac
ggtgaggctggaaaacccggcaaaggtggtgagcgtggagcttctggtcctcagggggct
cgtggtttcccaggaactcccggtctgcctggaatcaaggggcacagaggttacccaggt
cttgatggactcaagggagagagtggagctgctggttctaagggggagtctggtgctccc
ggtgagaatggcgctcccggaccaatgggaccacgtggtctgcccggtgagagaggtcgc
cccggttcctctggtgctgctggtgctcgtggtaatgacggtctgcccggccctgctggt
cctcctggcccagttggtcctgctggtgctccaggcttccccggctctccaggttctaag
ggagaagctggccccactggtgctcgtggacctgagggcgcccagggaccccgtggagaa
tcaggaacccccggatctcccggacccgccggcgcatctggtaaccctggtactgatggt
attggaggagctaaaggatcagctggtgctcctggtattgctggcgcgcctggcttcccc
ggaccccgtggtcctccaggtccccagggagccactggaccgctcggaccaaagggaaca
tctggtgaccccggtatcccagggttcaagggtgaggctggacccaagggagagattgga
cccgcgggtccccaaggagcccttggccctgcaggagaggaggggaagaggggacccaga
ggagagcccggcgctgctggacctctcggaccacccggagagagaggcgcccccggtaac
cgtggtttcccaggtcaggatggtctggctggtcccaagggagcccctggcgagcgtgga
gtcggcggtgtgtctggccctaagggagccggtggtgaccctggtcgtcctggcgagccc
ggtcttcctggcgcaagaggtcttactggtcgtcctggtgatgcaggtcctcaaggcaaa
gttggacccggtggttcggctggtgaggatggtcgccccggaccccctggcccaatggga
gcccgcggtcagcctggtgtgatgggattccccggacccaagggagccaacggcgaacct
ggcaagggaggagagaagggacttcttggtgcgccaggtctgagaggtcttcctggtaag
gatggtgagaccggagctgctggaccccctggccctgctggccctgctggagagagagga
gagcaaggacaacctggaccttctggcttccagggtctgcccggacctcccggcccccct
ggtgagggaggcaagcccggtgacatgggagttccgggagagggtggagctgctggtgcc
actggacccagaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcagggg
ctgcagggaccccgtggtcttcctggaactcctggaactgatggacccaagggcgcgatc
ggtccaggtggtgcatcgggtgcccagggaccccccggtctgcagggtatgcccggagag
agaggagcctcaggcatccccggacctaagggagacagaggtgacaatggagagaaggga
cctgagggtgcttctggcaaagacggctcaagaggtttgactggtccaattggtcctccc
ggcccagctggtcccaatggagagaagggtgaatctggtccctctggaccttccggtgct
gctggtgcccgtggtgctcctggtgacaggggcgagactggacctcctgggcctgctggc
ttcgctgggcctcctggatctgatggtcagcccggagccaagggagagcagggagagggt
ggacagaagggagacgctggtgcccccggaccccaggggccctccggagctcctggacct
tccggacctactggtgtttctggacccaaaggtgctcgcggtgctcagggaccccctggt
gccactggtttccctggagctgccggcagagtgggaccccctggtcccaatggtaaccct
ggtgctgctggtcccgctggcccttctggtaaagatggtcctaagggtgtgcgtggagac
ggtggacccccaggcaggcagggagacgctgggctgcgtggagccgctggagcccctgga
gagaagggagatgctggagaggatggtccccctggtcccgatggaccttcaggtccttca
ggtctagctggacagcgtggcattgttggtcttccaggacagcgtggagagagaggtttc
cctggcctgccaggaccctctggtgagcctggtaaacaaggagctcctggtggaagcgga
gaccgtggaccccctggcccagtgggaccccctggactgactggacccgctggagaacct
ggtagagagggcaacgctggttctgatggaccccctggtagagatggagccactggaatc
aaaggtgaccgtggtaacaccggtcctgttggtgctcctggcgccccaggtggtaatggt
gcccccggccccgtcggccccaccggcaagcagggagacaggggagaggctggagctcaa
ggacccgctgggccttccgggcctgctggagccagaggaatggctggaccccaaggaccc
cgtggagacaagggtgaggctggagagggtggcgagagaggacagaagggacacagagga
ttcactggtctgcagggtctgcctggacctcccggtcaagctggagaccagggtgcatct
ggacctgccggaccaagtggatcaagaggaccccccggacctgttggtccctctggaaag
gatggttccaacggtatgcccggtccaatcggaccccccggaccccgtggtcgctccgga
gagactggtccctctggtccccctggaaactccggaccccctggtcctcctggtcccccc
ggtcctggcatcgacatgtctgcattcgctggcctgtctcagcttgagaagtcccccgat
cccctgaggtacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgag
gtggacgccacactcaagtccctcaacaaccagatcgagaacatccgctcccctgagggc
tccaagaagaacccagcacgtacctgcagagacctgaagctgtgccaccctgactggaag
agcggtgagtactggatcgaccctaaccagggctgcaccatcgacgccatcaaggtctac
tgtaacatggagtctggagagtcctgcgtctaccccaagcccgccagcatccccaagaag
aactggtggtccagcaagagcaaggctgccaaacacgtctggttcggagagaccatgaac
ggaggattccacttcagctatggcgatgacagcctggcagccaacacagccagcattcag
atgaccttcctgcggctgctgtccaccgaggcaagccagaacctcacctaccactgtaag
aacagcgtggcctacaaggacggggccacgggcaacctgaagaaggccttgctgctccag
ggctccaacgatgtggagatcagagccgagggcaacagccgcttcacatacagcgtcatg
gaggacggctgcacgaaacacacaggagcctggggcaagacagtgattgactacagatca
cagaagaccagccggctgcccatcgtggacattgctcccatggatattggaggagcggac
caagagtttggagtcgacgtcggtgcagtctgcttcctgtaa
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