Coregonus clupeaformis (lake whitefish): 121578017 Help Entry 121578017         CDS       T08357                                  Name (RefSeq) integrin alpha-5   KO K06484   integrin alpha 5 Organism cclu  Coregonus clupeaformis (lake whitefish) Pathway cclu03266   Virion - Herpesvirus cclu04145   Phagosome cclu04510   Focal adhesion cclu04512   ECM-receptor interaction cclu04810   Regulation of actin cytoskeleton cclu04820   Cytoskeleton in muscle cells cclu05100   Bacterial invasion of epithelial cells cclu05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:cclu00001]  09120 Genetic Information Processing   09125 Information processing in viruses    03266 Virion - Herpesvirus     121578017  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     121578017  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     121578017   09144 Cellular community - eukaryotes    04510 Focal adhesion     121578017   09142 Cell motility    04820 Cytoskeleton in muscle cells     121578017    04810 Regulation of actin cytoskeleton     121578017  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     121578017   09171 Infectious disease: bacterial    05100 Bacterial invasion of epithelial cells     121578017  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04147 Exosome [BR:cclu04147]     121578017    04515 Cell adhesion molecules [BR:cclu04515]     121578017    04090 CD molecules [BR:cclu04090]     121578017 Exosome [BR:cclu04147]  Exosomal proteins   Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)    121578017 Cell adhesion molecules [BR:cclu04515]  Integrins   Integrin alpha subunits    121578017 CD molecules [BR:cclu04090]  Proteins   121578017 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Integrin_A_Ig_3 Integrin_A_Ig_2 Integrin_A_Ig_1 FG-GAP FG-GAP_3 ITGAX-like_Ig_3 DUF11 Integrin_alpha Motif Other DBs NCBI-GeneID:  121578017 NCBI-ProteinID:  XP_041747991 LinkDB All DBs Position 12:complement(23711688..23767580) Genome browser AA seq 1062 aa AA seqDB search MGTGRRLSTISVNSILGNPGYCARFVVLAVVFIQVCATFNLETENRVVYSGPKGSFFGYS LDFFYNNASSSSILIGAPKANTSQPNVIEGGSVYLCPWSQGQWDCSVVIFDKEGDRSFHV NDVDVQVEFKSHQWFGATVRSHGNTVLACAPRYYWRMEHDAPFSDATGTCYLSVDNLKTF VEYAPCRTERHGPAGQGYCQGGFSADFTKDGKIVLGGPGSFYWQGQLISATTEEIVKAYF PSYFLLSVTGQIQTRQVQGSYDDSYLGYSVAGGEFSGDNIEDFVTGVPKGLMLYGLVSIL NGTDLKSMLNLTGEQMGSYFGYAVAATDINNDGLDDLVVGAPMFMRRGSDGLRWEEVGRV YVYLQRRPLLFEPSLPPLGGSQAFGRFGSSLAPLGDLNQDGFNDIAIGCPFGGDDQQGLV LIYNGHASGLKDTPTQALAGQWASGTFPASFGYALRGNKDLDQNGYPDLIVGAFGADKAV LYRARPIVNASASLTVQPTMINSEEKGCMVSNGNKTISVSCVNLSFCLSANGKHLPADLV FMVEVQLDYLEQKQRESSVRRTLFLDSQQPSLLETITMANGGRTCHDTRIYLRSEGEFRD KLSPIYVTLNFSLDPLAPLDLHGLRPILNYQTTHIIKQKAQIQLDCGEDNICVPDLKLAV YGDRTEVYLGDENSLTLTFNARNEGEGGAYEAELYVVLPPEADYSGIARNNASLTQLTCS YEAENQTRYLVCDLGNPMKSGTSLWAGLRFTVPRLMDTHNTVQFELQIRSKNENKSQSDD ELFHLEVAVFADVILQGVSRPDKLLFPPPNWRMSHSLQEEQDVGPEIQHVYELVNNGPSM ISQSVLELRCPLRAQGHDLLYPLEVITQGPLYCSSNHTLNALKLKLQPPTTEQPPSPLTA SPEHHIQRREVYRDPLAEQGNLSCSTAECWRLRCHVGLLERGSSVILTVRSRIWPETFIE RAYKQYVLECSVQYRVEKMPYAIPPKLKPSGSQKVLTPVMWIKPDSQYTVPLWIIILAIL AGLLLLALLIYVLYKLGFFKRSNPYGTAMEKAQLKPQASSEA NT seq 3189 nt NT seq  +upstreamnt  +downstreamnt atgggcactggacggcgactttcaacaatttcagtcaactcaatcctgggaaatccaggt tattgcgcccggttcgttgtacttgcagtggtttttattcaggtgtgcgcaacgtttaac ttggaaacagaaaaccgggtcgtctactctggacctaagggaagttttttcggttattcc ttggattttttctacaataatgcatctagttccagtattctgattggtgctcccaaagct aacaccagccaaccgaacgtcatagaaggtggatctgtgtacttatgtccctggagccag ggtcaatgggattgcagtgtcgtcatttttgacaaagaaggagatcgcagtttccatgtc aacgacgtcgacgtccaggtcgagttcaagtcccatcagtggtttggggcgacggtgcgt tcccatggcaacactgttctggcttgtgccccgaggtattactggagaatggaacatgac gcccccttctcggacgccacaggaacctgctacctctccgtggacaacctcaagacgttt gtggagtacgccccctgtcgcacagagagacatggtcccgcagggcagggctactgtcag ggtgggttcagtgctgacttcaccaaggatgggaagattgttcttggaggaccaggaagc ttttactggcaaggtcaactgatctcagccaccacagaggaaattgtcaaggcctacttc ccttcctacttcctgctctctgttactgggcagatccagactcggcaggtgcaggggagc tatgacgacagctacctcggttactctgttgccggtggggagttcagtggagataatatt gaagatttcgtcaccggagtccccaaaggactcatgctgtatggtttagtgtccatactc aatggaacagatctgaaatccatgctgaacctaaccggagaacagatgggttcctatttc ggctacgcagtggcagccactgacatcaacaacgacggtctggatgacctggtggtgggc gctcccatgttcatgcggagggggtctgacggactgcgttgggaggaggtgggccgtgtc tatgtgtacctgcagcggcgtcccctgctgtttgagcccagcctgccccccctggggggg agccaggccttcgggaggttcggcagctccctggccccgctgggagacctcaaccaggac ggcttcaacgatattgcaattggctgtcccttcggaggagacgaccaacagggattggtc ctcatctataacgggcacgccagtgggctgaaggacacgcccactcaggctctagctggc caatgggcctctggcacctttcctgccagttttggctatgccctccgcggaaataaagat ctggaccagaatgggtacccagatctcatcgtaggtgcttttggggctgacaaggctgtt ctgtacagggctcggcctattgtcaacgccagtgcttctcttactgtgcaacctaccatg atcaactcagaggagaagggttgtatggtgtccaatgggaacaagactatctctgtgtct tgtgtcaacctcagtttctgcctctcggccaatgggaagcacctccctgctgatctagtt tttatggtggaggtgcagttggactatctggagcagaaacagagggaatcatcagtgagg agaactctgttcctggatagccaacagcccagcctgctggagaccatcactatggccaac ggaggacgaacgtgtcacgacacccgcatctacctgcgcagtgaaggggagtttcgggat aaactctcccccatttacgtcaccctcaactttagcctggatcctctcgctccactggac ctccatggcctgagacccattctaaactaccagacaacacatattataaagcagaaggcc cagattcaactggactgtggggaggacaacatctgtgttcctgacctcaaactggccgtt tatggcgataggacagaggtgtatctgggtgacgagaactccctgaccctgaccttcaat gccaggaacgagggagagggcggggcctatgaggcagagctttacgtggtgctacccccg gaggctgactacagtggtatagctcgcaacaatgcgagtctgactcagctgacctgtagc tacgaggcagagaatcagacccgctatctggtctgtgacctgggcaaccctatgaagtct ggaacaagtttgtgggcaggcctccgcttcactgtgccccgactgatggacactcacaat acagtgcagtttgagctccagatacgcagtaaaaatgagaataaatcccagagtgatgat gagctctttcatctggaggtggctgtgttcgccgatgttatcctacagggcgtttctcgt ccggacaagctcctcttccctcccccgaactggaggatgagccacagcctacaagaggag caggatgttgggcctgagatccagcatgtgtacgagttggtgaacaacgggcccagtatg atcagtcagtcggtgctggagctgcgctgccctctgagagctcagggtcacgaccttttg taccctctggaggtcatcactcagggaccactctactgcagctccaaccacaccctcaat gcactgaaactcaagctccagcctcctacaacagagcagcctccctccccactgacggcc agccctgaacaccacatccaacggagagaggtctacagggatcctctggccgaacaaggc aacctgtcgtgttctaccgctgagtgctggaggctgcgctgtcatgtggggttactggag agaggaagcagtgtcattctgaccgttcgctcacgcatctggcctgagaccttcattgag agggcatacaagcagtatgtgctggagtgttctgtccagtacagagtcgagaagatgccc tatgccatccctcccaaactcaaacccagtggatcccagaaggtcctgactccagtgatg tggatcaagccggacagccagtacacggtaccactgtggatcatcattctggcaatactg gctggactgctgctgctcgccctgctcatatatgtactctacaagttgggcttcttcaaa cgatccaatccttatggtacagccatggagaaagctcaactcaaaccccaggcttcttct gaggcctaa

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