Coregonus clupeaformis (lake whitefish): 121578080
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Entry
121578080 CDS
T08357
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
cclu04270
Vascular smooth muscle contraction
cclu04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121578080
04020 Calcium signaling pathway
121578080
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
121578080
09153 Circulatory system
04260 Cardiac muscle contraction
121578080
04261 Adrenergic signaling in cardiomyocytes
121578080
04270 Vascular smooth muscle contraction
121578080
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121578080
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121578080
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
121578080
NCBI-ProteinID:
XP_041748107
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All DBs
Position
12:25697268..25732342
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AA seq
1834 aa
AA seq
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MADSGGEPNLQSYIMDEETLKRKQKEKLKKLLATGGNPRPARSLFFLTLKNPFRKAAINI
VEWKPFEIIILLTIFANCVALAVFLPMPDEDSNNTNSNLESLEYIFLIVFSIECFLKIVA
YGFLFHENAYLRNCWNILDFVCVSVGLFAVIGDSITYISGVEAQPGEKGGGFDMKALRAF
RVLRPLRLVSGVPSLQVVMNSILKSMLPLFHISLLVFFMVTIYAIVGLELFKCKMHKTCY
YTGTNIIAIVENEKPSPCAQAGNGRRCTINGTECRAGWAGPNNGITHFDNLGFAMLTVYQ
CITTQGWTDVLYWVNDAIGMEWPWMYFLTLILVGSFFVLNLVLGVLSGEFTKEREKGKAR
GEYTEMRETQQLDEDLKGYMEWITQAEVMDADGEGQGLLPLEDGESEAGSLKDMDTMQKM
MYYYKLARKWNIFFRRKCLVYVKSRMFYWWVIFLVFLNTLAIATEHHKQSQQLTEWQDTA
NKVLLSLFAIEMFIKMYALGMQQYFMSLFNRFDCFVVSTGILELILVRMDVMTVMGISVL
RCIRLLRLLKVTKYWTSLSNLVVSLLNSTKSIASLLLLLFLFIVIFSLLGMQVFGGKFNF
PNQPKPRSTFDSFPQALISVFQILTGEDWNAVMYDGIMAHGGPTMPGILVSIYFIILFVC
GNYILLNVFLAIAVDNLAEAESLTMAQKEKSEEKKRKKLLRANMPDKATEEKALLAKKLA
AERAKIEGIPTTAKLKVDEFESNVNEIKDPFPPADFPGDDEEEEPDIPDAPRPRPMADLQ
LKEEVVPIPEASSFYIFSPQNKFRKLSHRIINATTFTNTILLFILLSSISLAAEDPIDPM
SFRNQVLASADVVFTSVFTVEVVLKMTVYGAIMHPGSFCRNSFNILDLIVVTVSLLSMLM
ESSAISVVKILRVLRVLRPLRAINRAEGLKHVVQCVFVAIKTIGNIVLVTMLLDFMFACI
GVQLFKGQFYSCTDPDKMTEEECKGNYIRYQEGAFHPMTIHKREWINSELNFDNILEGML
ALFTVSTFEGWPKLLYKAIDSNMEDVGPIYNNRVAISIFFIIYLILIAFFMMNIFVGFVI
VTFQEQGEQEYKNCELDKNQRACVEYALKARPLRCYIPKNQYQYNVWYIVTSCYFEYLMF
LLIMLNTMCLGMQHCNQSTHVTDLSDMLNVIFTVLFTVEMVLKLMAYKAKGYFGDPWNVF
DFVIVIGSVVDVILSEVDAALASSGGLYCLHGCAEVNPMQAIADSENARVSVTFFRLFRV
MRLVKLLNRSEGIRNLLWTFIKSFQALPYVALLILMLFFIYAVVGMQIFGKIALVDGTHI
NRNNNFQTFPHAVLLLFRCATGEAWQEVMLACLYGKRCDPKSDYLPGEEMTCGASFAIIY
FMSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKKIWAEYDPEAKGRIKHL
DVVTLLRRIQPPLGFGKFCPHRVACKRLVSMNMPLNSDGTVTFNATLFALVRTALKIKTE
GNFEQANEELRAIIKKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQDYFRKLKKRQ
EEYYGFRPTKKNASNEIQAGLRSIEEEVAPELQRAISGDLMNEEEMDRAMEDAAEEGIFR
RAGGLFGNHVDSFTMEEGTHNPNATQVTSQRPLQMSMSDEGEATSSPAYHANEDFFPTKP
NKTNNNNVNNNAGESFPNETDDRVQVYTISTSRSPRDTTDWHLQTVAGPSQDPETPRETP
SPQQAQAQAPDSSFDTLIQEVLINGGLESLARDPRFVSVAKQEMAEALNFDPVDMESSAT
ELMNGRRGRVATPPIRPPRRSQRKANKSTPTDLV
NT seq
5505 nt
NT seq
+upstream
nt +downstream
nt
atggcggacagtggtggcgaaccgaacctgcagtcctacattatggacgaggaaactctg
aagagaaagcagaaggagaagctaaagaagctcctggccactggaggaaaccctcggcct
gcgcgatccctcttcttcctcacgttgaagaaccctttccgaaaggctgccattaacatc
gtggaatggaaaccgttcgagatcatcatcctgctgaccatctttgccaactgtgtggcc
ctggctgtgtttcttcccatgcctgatgaggacagcaacaacaccaacagtaacctggaa
agtctggagtacatcttcctcatcgtgttctccatagagtgctttctaaagatagtagcc
tatggatttctatttcacgagaatgcatatctacggaactgttggaacatactggacttt
gtctgtgtgtctgtggggctattcgcagtcatcggtgactccatcacctatatcagtggt
gtggaggctcaaccaggggagaagggaggaggcttcgatatgaaggccctcagagcgttc
agggtgctccggcccctcaggcttgtctctggagtccccagcctgcaggtggtgatgaat
tccatcctgaagtccatgctacctctgttccatatctccctgctggtcttcttcatggtc
accatctatgctatcgtgggactggagctcttcaagtgcaagatgcacaaaacctgctac
tacacaggcacaaatatcatagccatagtggagaatgagaagccctctccttgtgcccag
gctggtaacggtcggcgttgcaccatcaacgggacagagtgtagggcaggctgggccgga
cccaacaacggcatcacacactttgacaacctgggcttcgctatgctcactgtctaccag
tgcatcactacccagggctggaccgacgtgctctactgggtgaatgatgctataggtatg
gagtggccgtggatgtattttctgactctcatcttggttggctccttctttgtgctcaac
ctggtcctgggcgtgctcagtggtgaattcactaaggagcgagagaagggtaaagcgcgt
ggagagtacacagagatgagggagacccagcagctggatgaggatctgaagggctacatg
gagtggatcacacaggccgaagtcatggacgccgacggggagggacagggcctgctaccc
ctggaggatggagaatccgaggcagggagtctaaaggacatggacaccatgcaaaaaatg
atgtactactacaagcttgctcgtaaatggaacattttcttccggcgtaagtgtcttgtg
tatgtgaaatcccgtatgttctactggtgggtgatctttctggtgtttctgaacacgctg
gccatcgctactgaacaccacaagcagtcccagcaactcactgagtggcaagacactgcc
aacaaggttctgttgtctctgtttgccattgagatgtttataaagatgtacgctctgggc
atgcagcaatacttcatgtctctgttcaaccgcttcgactgcttcgtggtctccaccggc
attctggaactcatcctggtccgcatggatgtcatgaccgtcatgggcatctccgtgctg
cgctgcattcgactgctaaggcttctcaaagtcaccaagtactggacatctctcagtaac
ttagtggtatccctgctgaactccacaaagtccatcgcctctctgctcctcctcctcttc
ctcttcatcgtcatcttctccctgctgggcatgcaggtgttcggaggcaagttcaacttc
cccaaccagcccaaaccccgcagcacctttgacagcttcccccaggccctcatcagtgtc
ttccagatcctgacgggggaggactggaacgctgtgatgtatgatggcatcatggcacat
ggcggtcccaccatgcccgggatcctcgtcagcatctacttcatcatcctcttcgtctgc
ggaaactacatcctgctgaatgtgttcctggccatcgccgtggacaacctggcggaggcc
gagagtctgaccatggcccagaaggagaagtctgaggagaaaaaacgcaagaagctgctc
agggctaacatgcctgacaaggccacagaggagaaggccctcctggccaagaagctggca
gcagagagggctaaaatagagggcatccctactacagccaagttgaaagtagatgagttt
gagtccaacgtgaatgagatcaaggaccccttcccccctgctgactttcctggtgatgat
gaggaggaagagcctgatatccctgacgccccgaggccccgaccaatggcagacctgcag
ctgaaggaggaggtggtgcctattccagaggccagctccttctacatcttcagccctcag
aacaagttccgtaagctgagccaccgcatcatcaacgccaccaccttcaccaacaccatc
ctcctcttcatcctcctcagcagcatctccctagccgccgaggaccccatcgaccccatg
tccttcaggaaccaggtgctggcctccgctgatgttgtcttcacctcagtgttcactgtg
gaagttgtcctcaagatgaccgtatatggcgccataatgcaccctggctccttctgccgg
aactcctttaatatcctggatctgatagttgtcaccgtatccctcctctccatgctcatg
gaatccagtgctatctctgtggtgaagatcctcagggtgttaagggtgctgaggccccta
agggccatcaacagggccgagggcctcaagcatgtggtccagtgtgtttttgtggccatc
aaaaccatcggcaacattgtgctggtcaccatgctgctagacttcatgttcgcctgcatt
ggagtccagctcttcaagggccaattctactcctgcacagatcctgacaaaatgacagag
gaggagtgcaagggtaactacattaggtaccaggaaggtgccttccatccaatgacgatc
cataagagagagtggatcaactcagagctcaactttgacaacatcctcgagggcatgctg
gctctcttcactgtctccaccttcgagggctggccaaagctgctctacaaggccatagac
tctaacatggaagatgttggccccatctacaacaaccgtgttgccatctccattttcttc
atcatctatctcatcctcatcgccttcttcatgatgaacatcttcgtcggattcgtcatc
gttacatttcaggagcagggagagcaggagtacaagaactgtgagctggacaagaaccag
cgtgcgtgtgttgagtacgccctgaaagcccggccgctgcgctgctacattcctaagaac
cagtatcagtacaatgtgtggtacattgtcacttcctgctactttgagtacctcatgttc
ctgctcatcatgctcaacaccatgtgtctggggatgcagcactgtaaccagtcaacccat
gtgaccgacctgtctgacatgctgaacgtgatcttcactgtgctcttcactgtggagatg
gtcctcaaactcatggcctacaaagctaagggttactttggggacccatggaacgtcttt
gactttgtcatcgtcatcggcagcgttgttgacgtcatcctgagtgaggtcgatgcagcc
ctggcctcctctggaggactgtactgtctccacggctgcgctgaggtgaacccaatgcaa
gccatagcggattctgaaaatgcccgtgtgtcagtcaccttcttcagactgttccgtgtg
atgcgtctagtgaaactgctgaaccgttctgagggtatccggaatcttctgtggaccttc
atcaagtccttccaggctctgccctacgtcgccctgctcatcctcatgctgttcttcatc
tacgctgttgttgggatgcagatatttggtaagatagcgctggtagacgggactcacatc
aacaggaacaacaacttccagaccttcccccatgctgtgctgctgctcttcaggtgtgcg
acaggtgaggcgtggcaggaagtgatgttggcatgtctgtatgggaagaggtgtgaccct
aagtcagactacctgcctggggaggagatgacctgtggagccagcttcgctatcatctac
ttcatgagcttctacatgctctgtgccttcctgatcatcaatctgtttgtggctgtcatc
atggacaactttgactacctgacccgtgattggtccatcctcggccctcatcacctggac
gagtttaagaagatctgggcagagtacgacccagaggccaagggacgtattaagcacctg
gacgtggtgactctgctgcgtaggatacagcctcctctgggctttggaaagttctgcccc
catagagtggcctgcaagagactggtgtccatgaacatgccactcaatagtgatggaacg
gtcacctttaacgctacactgttcgcactggtcaggaccgcactgaagattaagactgaa
ggtaactttgagcaggccaatgaggagctgagggccatcatcaagaagatctggaaacgc
accagtatgaagctgctggaccaggtcatcccaccaatcggagatgatgaggtgaccgtg
gggaagttctacgccaccttcctgatccaggactacttcaggaagttgaagaagagacag
gaggagtattatggcttccgccccaccaagaagaacgcctccaacgagatacaggcgggt
ctgaggagcattgaggaggaggtggctccagagttgcagagagccatctcgggagacctg
atgaacgaggaggagatggacagagccatggaggatgcagcggaggaaggcatcttcagg
cgggcgggcggtctgtttgggaaccacgttgattccttcaccatggaggaaggaacccat
aaccctaacgctacacaggtgaccagccagcggcccctgcaaatgagcatgtcagacgag
ggggaggcgaccagctcacctgcctaccatgcaaacgaggacttcttcccaacaaagcct
aacaaaaccaacaacaacaatgtcaacaacaacgccggggagagctttcccaatgagaca
gatgacagggtacaggtctataccatctcaaccagcagaagcccccgagacaccacagac
tggcatctgcagacagtagctggacccagccaggaccctgagactcccagagagaccccc
agcccccagcaggcccaagcacaggccccagacagctccttcgacacactcatacaggag
gtcctgataaacggggggttggagagcttggccagggaccctcgttttgtgtcggtggcg
aaacaggaaatggccgaagctttgaactttgaccctgtggacatggagagttccgccact
gagcttatgaatggtcgcagagggagggtcgccacacctccaatcaggccccctcgcaga
tcacagagaaaggccaacaaatcaacacccaccgatcttgtgtag
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