Coregonus clupeaformis (lake whitefish): 121578081
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Entry
121578081 CDS
T08357
Symbol
lamb3
Name
(RefSeq) laminin subunit beta-3
KO
K06244
laminin, beta 3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121578081 (lamb3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121578081 (lamb3)
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
Laminin_N
EGF_LMN_ATRN
KASH_CCD
GEMI5_RBS
GldM_1st
Talin_IBS2B
APG6_N
DUF7798
Laminin_I
YscO-like
ATG17_like
LAMB1
ApoLp-III
COG6_N
Motif
Other DBs
NCBI-GeneID:
121578081
NCBI-ProteinID:
XP_041748108
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Position
12:25481813..25505263
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AA seq
1162 aa
AA seq
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MWILFQLAALTAVAATQRDCSQGACYPPMGDLLLGRDRQLHASSTCGLTGSEVFCTLFGQ
SRMKCCPCDSRNPSSQLAHTIQDVLSTAGPNRWWQARKDVSPVTLQLDLQNLFQLDTLVL
TFKGPRPSALVVERTLDNGKTWQPALYMASDCSSAFPGIAMTMPRSLDQTYCYTLPPATT
NPYQDQIIQFSPLRQFSTISIPNGRKIQEVSGLTGLRVMLTKLGAVPRLPGRAPSLFYAL
REMRVMGTCLCHGHANRCLPDTNQLPNTQVSAQCECQHNTAGTNCERCADLYNDLPWRPA
EEGHTHTCKRCECNNHAQRCRFDPAVYESSGRRSGGVCESCLHHTTGPKCDRCAPGYQPN
HRSSMDRPDACIRCHCSAEGVENGDQCDDVTGSCRCKANVDGSRCDRCKMGYYGLTASNP
LGCNKCPCSKEGSVSSVCDPVSGQCPCRPHLQGLTCDQCSHGYWNPSSPRGCEPCRCDPT
NSHGDTCDQSTGQCQCRSGFGGRTCTECPDNTYGDPLIGCRSCQCAAGGTVPGGCDKRTG
ACQCQLGVTGARCDACTRGHCDSFPDCEVCPSCFFSLDMNIQNLTLGLERLFSRIPSLPG
GSLPTGLGPRIRTLEATLTQIRDSLPMPPPSARQVNDALSQLRRLRDQLDQVDGDLSPQG
RAPELGSQLDELQALLDGLGLVYNTKRDALRNSVNSNYAGAFSSIKNAYDESTDSAKNVD
ASGKTVERSTAVREDALDLQNQVQPANTIDLEKLNQQLNTKPDLTPTAKQVCGSVRFAPC
TPAQCDGELCPAEGAPPCGRGERCVGALPLGTRAVSDAEEVKDRLKQLNGKITQAAARIQ
ETQDTANQVRQSTDDLANQMRQARDDLDADLQETRDFVKELKDFLSDPSSDLTLISTVSE
WILNAKLPVSLATLKRKLKEIRDLAAGLPDSTAVLDQAGPQLDTARRLLQEAQDARDAAL
GVKADVDGLLEGFTTVEGSLSGLEDKVQDSLDIVDDISSNLTQTKAQLSPAVKALGEVSA
LAEGMKPQLEGLWALVRSGDMLAQNATEDADKAKREADAAAKELASLEKQLEKLRAAERT
SGRGDGTGRAGERLQKLQEEAGSLAQDTGDMIKALAGKADSLHSLQGEVLLTSQRLNGLE
TKLLDLLADMRQKVTILSTCQG
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgtggattttattccagttagcagccctgactgcagtggctgcgactcagagggactgt
tctcagggggcctgttaccccccaatgggagacctgctcctgggtagggaccgtcagctc
cacgcctcctccacctgcggcctcaccggctctgaggtcttttgcaccctcttcggacag
tcgaggatgaagtgttgtccctgtgactccaggaacccatccagtcagttggctcacacc
atccaggatgttctatccactgctggacccaacaggtggtggcaggccaggaaagacgtg
agtccggtcaccctacagttggacctacagaacctgtttcagctggacaccctcgttctg
accttcaagggtcctcgtcccagtgcgctggtggtggagaggacgctggataacggtaaa
acatggcaacctgctctctacatggcctcagactgcagctcggccttccctggcattgcc
atgactatgccacgttccctggaccagacctattgctacactctgccccccgccaccact
aacccctaccaggaccagattattcaattcagccccttgcgtcagttctctaccatcagc
atccccaatgggaggaagattcaagaggtgtcaggattgacaggcctgcgggtgatgctg
actaagctgggtgctgtgccccgcctgccgggccgcgctccctctctgttctacgccctc
agagagatgagagtgatgggcacctgcctctgccacggccatgccaaccgctgtctgccg
gatactaaccagctacctaacacacaggtcagtgctcagtgtgaatgccagcacaacaca
gcaggtacaaactgtgagcgctgtgcagatctctacaacgacctgccctggagacctgca
gaggagggacatacacatacctgcaaacgttgtgagtgtaacaaccacgcccagcggtgc
cgttttgacccagctgtgtatgagtcgagcggacggaggagtgggggggtgtgtgagagc
tgtctgcaccacacgaccgggcccaagtgtgaccgctgtgcccctggataccaacccaac
caccggagcagcatggaccggcctgatgcctgcatacgctgtcattgcagtgctgagggg
gtggagaatggggatcagtgtgatgacgtcacagggtcctgtcgctgtaaggccaatgtt
gatggatcgcgctgtgaccgctgcaagatgggatactacggtctgaccgcctccaaccct
ctgggctgcaacaagtgcccgtgcagtaaagagggctccgtgtccagtgtgtgtgaccct
gtgagtggtcagtgtccttgccgaccccacctccaggggctgacctgtgaccaatgttcc
catggttactggaatccatcctccccccgtggttgtgagccctgtcgctgtgaccccacc
aactcccatggtgacacctgtgaccagagtacgggtcagtgtcagtgcaggtcagggttt
ggaggtcgtacctgtacagaatgccctgacaacacctacggagacccactcattggctgc
agatcgtgtcagtgtgctgctggtggcacagtgccaggaggctgtgataagcgtacgggg
gcctgccagtgccagctgggtgtcacaggtgcccgttgcgatgcctgtacccgtggccac
tgtgactccttccctgactgtgaggtctgcccctcctgctttttctctctggacatgaac
atccagaaccttaccctgggcctggagagactcttctccaggattccctctcttcctggg
ggctcgttgcctaccggtctgggtccccgcatcagaaccctggaggccactctcacccag
atacgagactctctcccaatgccacctccctctgccagacaagtcaatgacgccctctct
cagctccgcaggctaagggaccagttggatcaggtggatggagatctgtcaccccaaggc
cgagcccctgagcttggctcacagctggacgaactccaggctctactggacggcctgggt
ctggtgtacaacaccaagagagatgctctcaggaactctgtcaactccaactatgcaggg
gccttctcttccataaagaatgcctatgacgagtcaactgactcggccaagaatgttgat
gctagtgggaagactgtagagcggtcaacagcggtcagagaagacgcccttgacctccag
aaccaggtccaaccagccaacaccatagacctggagaaactaaaccagcagctgaacacc
aaacctgacctcacacccactgccaagcaggtgtgtggaagcgtgcgctttgccccctgt
acccctgctcagtgtgatggtgagctgtgccctgcggagggggcgccaccctgtggccgt
ggggagcgttgcgtcggggctctgcctctggggacccgggctgtgagtgatgctgaggag
gtgaaagacagactgaagcagctcaatgggaagatcacacaggccgctgcacggatccag
gaaacacaggacacagccaatcaggtcagacagtccacggacgatctggccaatcagatg
aggcaggccagggatgacctggatgcagatctgcaggagacaagagactttgttaaagag
ctgaaggacttcctgtcagacccgtcatcagacctgacactcatcagtacggtgagtgag
tggatcctgaacgccaagctgcctgtcagtctggctactctgaagaggaagctcaaggag
atcagagacctggcggcaggactcccagacagcactgcagtcctggaccaggctggacca
cagctcgacaccgcccgacgcctgctacaggaggcccaggacgccagggatgctgcgctg
ggtgtgaaggctgatgttgacgggctgttggagggcttcaccaccgtggagggctccctc
tctggcctggaggacaaagtgcaggacagcctggacatagttgatgacatcagcagcaac
ctcacacagaccaaggcccagttgtctccagcggtgaaggctctaggggaggtgtctgcc
ctggctgaggggatgaagcctcagctggaggggctctgggctctggtgcgctctggagat
atgctggcccagaatgcaacagaagacgctgataaagctaagagggaggcagacgctgcg
gccaaggagctggcatccctggagaagcagctggagaagctgcgtgctgcagagaggacc
agtgggcgtggcgatgggacagggagagcaggggagcgtctccagaagctgcaggaggag
gctggttctctggcccaggacactggagacatgataaaggcactagcaggtaaagcagac
tctctgcatagtctacagggtgaggtcctactaacgtcccagaggctgaacggactggaa
accaaactgctggacctcctggctgacatgagacagaaggtcacgatcctctccacctgc
cagggctga
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