Coregonus clupeaformis (lake whitefish): 121578082
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Entry
121578082 CDS
T08357
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-3-like isoform X1
KO
K04860
voltage-dependent calcium channel alpha-2/delta-3
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121578082
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
121578082
04261 Adrenergic signaling in cardiomyocytes
121578082
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121578082
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121578082
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
VWA_N
VGCC_alpha2
dCache_1
VWA
VWA_2
VWA_3
MCP-like_PDC_1
SepSecS
VWA_CoxE
dCache_2
Motif
Other DBs
NCBI-GeneID:
121578082
NCBI-ProteinID:
XP_041748109
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Position
12:24764090..24860590
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AA seq
1092 aa
AA seq
DB search
MLWNWRILFSHVCCASFLLFWIILGTAVVDVMGSQQGIPLSVVKLWASAFGGEIKSISAK
YSGSQLLQKKYKELEKSVRVEEIDGMKVVKNLSKKMEEMFRMKKEAIRRLVEAAEEAHLQ
HEENPELQYEYFNAVLINEVDEEGNNVELGGEFVLEPNEHFNNLSVNLSLSVVQVPTNMY
NKDPAIVNGVYWSEALNKVFVDNFEKDPSLIWQYFGSAKGFFRQYPGVKWHPDEHGVIAF
DCRNRKWYIQAATSPKDVVILVDVSGSMKGLRLTIARQTVSSILDTLGDDDFFNIIAYNQ
EIHYVETCLNGTLVRADRNNKAHFREHLDKLFAKGIGLLGDALTEAFTILNDFNQTGHGS
VCSQAIMLVTDGATQMYDDVFAKFNWPDRKVRIFPYLIGRESAFADNMKWMACANKGYFS
QISTLADVQENVMRYLHVMSRPKVIDHEHDTVWTEAYMDSTVSIILSQAHKSRNKKGPSL
MTTVAMPVFSTKNETKNQGILLGVVGTDIPLQELMKIIPKHLLGIHGYAFAITNNGYILT
HPDLRPLYEEGQKRRKPNYSSVDLSEVEWEDKDDFLRNAMVNRKTGTFSMEVKKTVDKGK
RLLKMHNDYYYTEVKGTPFSVGVALSRGHGKFFFRGNVSVEAGLHDLEQPDVALADEWTY
CNTDEHHEHRSLSQIQAIKLYLTGRKPLIKCDRELIQEVLFDAVVTAPLEAYWTGLALNK
SENSDKGVEIAYLGTRTGLSRTNLFVVTEDLSNQDFLTAEDKEGVFNADHFPLWYKRSAE
QVPGTFVYSIPFGGNENKSVVLASTAIQLLDDRKSPIVASVGIQMKLDFFQRKFWTASRQ
CAALDGKCTISCDNEDIKCYLIDNNGFILVTEDYSQTGKFFGEVEAAVMNKLLLIGSFKR
INLHDYQALCREYAGSSDSGHCLSHPFSIVKWLLTELVIFLLEFNLYSWWHVDLSVKAQS
SRGKTMMVPCDTEYPAFVSERTIKETTGNIDCEGCVRSFVIQQIPSSNLFMVVVDNKCDC
SSALPVSMDPIEIMYNESLKCDRLKFQKDRKRPESCHPFHPEENAMECGGAAGLSAPLTA
ALLPLLATLFTR
NT seq
3279 nt
NT seq
+upstream
nt +downstream
nt
atgctgtggaattggaggatcctcttttcgcacgtgtgctgcgccagtttccttctcttc
tggattatactgggcacggcggtggtggacgtgatggggtcccagcaagggattcctctc
tcagtggtgaagttatgggcctcagcgtttggtggagaaattaaatcaatttctgcaaaa
tactctggatcccagctgctgcagaagaaatataaagaattggaaaagtctgtccgagtg
gaagaaattgatggcatgaaagtggtcaaaaatctatcgaagaagatggaggagatgttc
cggatgaaaaaggaggccattcggaggctggtggaggcagcagaggaggcacatctacag
cacgaggagaacccggagctacagtatgagtacttcaacgcggtgctgatcaacgaggtg
gatgaggagggcaacaacgtggagctgggaggagagtttgtcctggaacccaacgaacac
ttcaacaacctgtcagtcaacctcagcctcagtgtggtgcaggtgcccaccaacatgtat
aacaaagatcctgccatagtgaatggggtgtattggtcagaggccttgaataaagtgttt
gtggataactttgaaaaagatccgtccctgatatggcagtactttggaagtgccaagggc
ttctttaggcagtatcccggggtcaaatggcatccagacgaacacggggtcattgccttc
gactgcaggaacaggaaatggtacatccaggcagcaacgtctcctaaagacgtggtgatt
ctagtggacgtgagtggcagtatgaagggcctgagactgaccatcgccagacagactgtc
tcctctatactggacacactgggagatgacgatttcttcaacatcatcgcttacaatcaa
gagattcactatgtggagacttgtctgaatggtacactggtacgggcggacaggaataat
aaagctcattttagagaacatctggacaagctgtttgccaaagggattggtctgctgggt
gatgctcttaccgaagcattcaccattctaaatgattttaaccagactggccatggcagt
gtgtgtagccaggccatcatgcttgtgactgacggggccacacagatgtacgacgatgtt
tttgccaagttcaactggccagacagaaaggtgcgcatattcccttacctgattggccgg
gagtctgcctttgctgataacatgaaatggatggcctgtgctaataaagggtatttcagt
cagatctccacactggctgatgtacaggagaatgtgatgaggtatcttcatgttatgagt
cgtcctaaagtcatcgaccacgaacatgacacggtctggacagaggcctacatggacagc
actgtgagtattatactctcccaggcacacaagtccagaaacaagaagggccctagcctg
atgaccactgtggccatgcctgtgttcagcaccaagaacgagacgaagaaccagggtatt
ctcctaggggtagtgggcacagacattcccctacaggaactcatgaagataatccctaaa
cacctgctgggtatccacggttacgcatttgccatcacaaacaacggctacatcctgacc
catccagacctgaggccactgtatgaggagggccagaagaggaggaaacccaactacagc
agtgtggacctatctgaggtggagtgggaggacaaggatgactttctgcgtaatgccatg
gtcaacaggaagactgggacgttctccatggaggtgaagaagacagtggacaaagggaaa
cgtctcctgaagatgcacaatgactactactacactgaagtcaaaggaactcccttcagt
gtcggtgtggctttgtccagaggccatggcaaattcttcttcaggggaaacgtctccgta
gaagcagggcttcatgacctggaacagccagatgttgcgctggcagacgaatggacgtac
tgcaacacagacgagcaccatgagcaccgttctctctcccagatccaggctattaaactc
tacctgaccggacgcaaaccactcatcaaatgtgacagggagctgatccaggaggttttg
tttgatgctgtggtcacagccccactggaggcctactggacaggcctggccctcaacaag
tcagagaattcagataaaggtgtggagattgcttacctgggcacacgcactggcctctct
agaaccaacctgtttgttgtcacagaggacctatccaatcaagacttcctgacagcggag
gataaggagggggtgtttaacgctgaccacttccctctgtggtataagagatcagcagag
caggtccccggcacctttgtctactccatcccctttggaggaaatgagaataagagtgtg
gttttggccagcactgccatacagctgctggatgacaggaagtcacccattgttgcatcc
gttgggattcaaatgaagctggatttctttcaaaggaagttctggaccgctagcagacag
tgtgctgctctggatgggaagtgcaccatcagctgtgataatgaggacatcaagtgttac
ctcatagacaacaacggctttattctggtcacagaagactactctcagacagggaagttc
tttggcgaggtggaggctgctgttatgaacaagctgctcctcattggctccttcaaaagg
atcaatctgcatgactaccaggctctctgtagagagtatgctggcagcagtgatagtgga
cactgtttatcacatcccttctccattgtgaaatggctcctgaccgaactagtcattttc
ctgctggagttcaacctgtacagctggtggcatgttgacctctctgtcaaagcccaaagc
tcgaggggaaagaccatgatggtgccatgtgatactgagtaccctgccttcgtctctgag
cgtaccatcaaagaaaccacaggcaatattgactgtgagggctgtgtcagatcttttgtt
attcagcagattcccagcagtaacctcttcatggttgtcgtagacaacaagtgtgactgt
agctccgcccttccagtttccatggaccccattgagattatgtacaacgaatctctgaaa
tgtgataggctgaagtttcagaaggacaggaagcggccagaatcatgtcatcctttccac
cctgaggagaatgccatggagtgtggaggagcagcaggcctgtctgcccccctcacagca
gcactgctccccctgctggccactctcttcaccagatga
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