Coregonus clupeaformis (lake whitefish): 121578114
Help
Entry
121578114 CDS
T08357
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1
KO
K04851
voltage-dependent calcium channel L type alpha-1D
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04010
MAPK signaling pathway
cclu04020
Calcium signaling pathway
cclu04218
Cellular senescence
cclu04260
Cardiac muscle contraction
cclu04261
Adrenergic signaling in cardiomyocytes
cclu04270
Vascular smooth muscle contraction
cclu04530
Tight junction
cclu04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
121578114
04020 Calcium signaling pathway
121578114
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
121578114
09144 Cellular community - eukaryotes
04530 Tight junction
121578114
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
121578114
09153 Circulatory system
04260 Cardiac muscle contraction
121578114
04261 Adrenergic signaling in cardiomyocytes
121578114
04270 Vascular smooth muscle contraction
121578114
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121578114
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
121578114
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
GPHH
Ca_chan_IQ
PKD_channel
DUF2975
Motif
Other DBs
NCBI-GeneID:
121578114
NCBI-ProteinID:
XP_045079700
LinkDB
All DBs
Position
12:24632131..24742226
Genome browser
AA seq
2147 aa
AA seq
DB search
MSANGPAPVALATAPAATPVAPPVAAPVAAPTAAPVPVPTVPVGALAQKKRAQYAKSKKQ
GSNANTRPARALFCLKLNNPIRRACISLVEWKPFDIFILIAIFANCMALAVYIPFPQDDS
NSTNHDLETVEHVFLVIFTIETFLKIIAYGLVAHQNAYVRNGWNMLDFVIVVVGLFSVVL
ELLTKDSVETKEEAEAGAAAAAAAAALHPSAQGHGGKSGGFDVKALRAFRVLRPLRLVSG
VPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFIGKMHATCFFPSTGMIAEDD
PAPCAISGHGRQCPINGTECREGWHGPNNGITNFDNFLFAMLTVFQCITMEGWTDVLYWM
NDAMGLELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQLEE
DLKGYLDWITQAEDIDPDNEDEEGNEEGKRNPSMPASETESVNTENVAEDEVKTPCCGPF
CQKISKSKFSRRWRRWNRFCRRKCRLAVKSVPFYWLVIILVFLNTLTISSEHYMQPDWLT
QVQDVANKVLLGCFTCEMMTKMYSLGLQAYFVSLFNRFDCFVVCGGITETILVELAIMSP
LGISVFRCVRLLRIFKVTRHWQSLSNLVASLLNSMKSIASLLLLLFLFIIIFSLLGMQVF
GGKFNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVMYDGIMAYGGPSSSGMIVSFYF
IILFICGNYILLNVFLAIAVDNLGDAESLNAPRDKKEVKKEEVPVEEEEENAAAEEEEEP
EVPAGPRPPISELVKKEKITPIPDGTAFFIFSKTNPIRVGCHKLINHHIFTNLILVFIML
SSVSLAAEDPIRNFSARNIILGYFDYAFTAIFTVEILLKMTTYGAFLHKGAFCRNTFNLL
DLLVVGVSLVSFCIQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGNI
MIVTTLLQFMFACIGVQLFKGKFYRCTDEAKSSPDECKGTYIHFKDGDVNQPAIHKRVWH
NSEFNFDNVLMAMMALFTVSTFEGWPSLLYKAIDSNRENLGPIYNYRIEISIFFIIYIII
IAFFMMNIFVGFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRYIPKNPYQYKF
WYVVNSTGFEYIMFVLIMLNTLCLAVQHYGQSATFNYVMDILNMVFTAVFTAEMVLKLIA
FKPRHYFTDAWNTFDALIVVGSVVDIAITEVNPTEAPQLDESGNTEDSARISITFFRLFR
VMRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQVFGKVAMVDGTH
INRNNNFQTFPQAVLLLFRCATGEAWQEIMLACVSGKLCDPESDYNPGEEMTCGASFAYI
YFISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKH
LDVVTLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKT
DGRRLTHTPQQHNTTTVSSVQFVLIVIGHVLFTCAVGNLEQANEELRAVIKKIWKRTSMK
LLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEEGLVGVHASQNNTAIALQAGLRT
LHDIGPEIRRAISCDLQDDELVDFIPEEDEEIYRRNGGLFGNHVNHVNGDHHRRSSGHQT
NATQRPLQVQPPPHYAHMEQPVGRLCRANAMSHPNHHHHHHRHHHHHNSSYGKSPKSTNI
NLNNANMSSLPNGGGHHHRYYEHAPPPANGYPGHRGGPYYPDYDKPPPRGTPQGQRRRYY
ETYVRSHMGDARHPTIRREEEFDDDRYSGEYYSGEEFYEDDSMLSGDRMSYKEYLDRYQN
SDTEYETPRGYHHPDSYYDDDEQPLYQDGRRSPKRRMLPATPQGHRRPSFNFECLRRQGS
QDELPHQRTALPLHLMQHQVMAVAGLDSSRAHRLSPTRSTRSWATPPATPASKEQSPFYT
PLIRVDLPGRRESAASSQVSVRKSSWYTDDPEYSQRTYSPVHLQLPPEYRQHYHQKRGSA
TSLVEAVLISEGLGRYAKDPKFVAATKHEIADACEMTIDEMESAASHLLNGGLAPAVNGV
NVYPVMSEQDYDLQDATASYSDEEPEVELRLPYEEDLADEMICITTL
NT seq
6444 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccaacgggcccgcccctgtggccctggctacggccccagctgcaaccccagtc
gccccgccggttgccgctccggtagccgcccccacggctgccccggtccctgtgccgacc
gtcccagtgggcgcgttggcacagaagaagcgggcgcagtatgccaaaagcaagaagcag
ggcagcaacgccaacaccaggcctgccagggccctgttctgcctcaaactcaacaacccc
atacgaagagcctgcatcagcctggtggagtggaagccatttgatatctttatattaatt
gctatatttgccaactgtatggccttagctgtgtacatccccttccctcaggatgactcc
aactccacaaaccatgacctggaaacggtagaacatgtcttcctcgtcattttcactata
gaaaccttcctgaagattatcgcctatggtttagtggcgcaccagaacgcatatgtgaga
aacggatggaacatgctggattttgtcattgtcgttgttggactgttcagtgttgtactg
gagcttttgaccaaagactctgtagagacgaaggaggaggcagaggcgggtgcggctgca
gcagcggcagcggcagcgctccacccctccgcgcaaggccatgggggaaagtcaggcggc
ttcgacgtcaaagccctccgggccttccgtgtactgcgacccctacgcctggtctcagga
gtgcccagtttacaggttgtgttgaactccattattaaagccatggtccctctcctccac
atcgccctgctggtcctgtttgtcatcatcatctacgccatcatcggcctggagctcttc
attggcaaaatgcacgctacctgcttcttccccagcacaggcatgatagcagaggatgat
ccggctccgtgtgcgatctcagggcatgggcgccaatgtcccatcaacggcaccgagtgc
agggagggctggcacggccccaacaacggcatcaccaactttgacaacttcctgttcgcc
atgctgaccgtgttccagtgtatcaccatggagggctggacagacgtgctctactggatg
aatgatgctatgggtctagagcttccatgggtctactttgtttctctggttatcttcggc
tccttctttgttctaaacctggttctgggagtgttgagcggagagttctccaaggagaga
gagaaggccaaggccagaggagacttccagaagctgagagagaagcagcagctagaggag
gacctgaagggctacctggactggatcactcaggccgaggacatcgaccctgacaacgag
gacgaggagggcaacgaggagggcaaacgcaacccgagtatgccagccagtgagacggag
tcggtgaacacagagaatgtggccgaggatgaggtgaagacaccatgctgtggacctttt
tgtcaaaaaatttctaagtcaaagttcagtcggcgctggcgtcgctggaacaggttctgc
cgcaggaagtgccggttggcggtgaaatcagtgcctttttattggctggtgatcatcctg
gtgtttctcaacactctcaccatctcctcagagcactacatgcagcctgactggctcact
caagtacaggacgtggcaaacaaggttctgctgggatgttttacgtgtgagatgatgacc
aagatgtacagtctgggcctgcaggcctacttcgtgtccctgttcaaccgcttcgactgc
tttgtagtgtgtggaggcatcacagagaccatcctggtggagctggccatcatgtctcct
ctcggcatctctgtgttccgctgtgtccgcctgctcaggatcttcaaggtcacacgtcac
tggcagtctctcagtaacttggtggcatcgctgctcaactccatgaagtccatcgcctcc
ctgctcctcctcctcttcctcttcatcatcatcttctccctgctgggcatgcaggtgttc
ggaggcaagttcaacttcgacgagacacagaccaagaggagcaccttcgataacttcccc
caggcactgctcactgtgtttcagatcctaacaggtgaagactggaacgctgtgatgtat
gacggcatcatggcatacggcggcccttcctcctcagggatgatcgtctccttctacttc
atcatcctcttcatctgcggaaactacatcctgctgaacgtcttcttggctatcgctgtg
gacaacttgggagacgcagagtctctcaatgctccgcgagacaaaaaggaagtgaaaaag
gaagaggtgccagtggaggaggaagaggagaatgctgcagcagaggaggaggaggagccg
gaggttccagcagggccacgcccacccatctctgaactggtcaagaaggagaagatcact
cccatccctgatggcaccgccttctttatcttcagcaagaccaacccgatccgggtggga
tgtcataaactcatcaatcaccacatcttcaccaacctcatcttggtcttcatcatgctc
agctctgtctccctcgctgcagaggaccccatacgcaacttctctgctcgcaacattata
cttggttactttgactatgctttcacggctatctttactgttgagatcctgttgaagatg
accacatatggggcgttcctccataaaggagcgttctgtaggaacaccttcaacctgctg
gatctgctggtggtgggggtctccctggtctccttctgcatccagtcctctgccatctca
gtggtgaagattctgagggtcctgcgtgtgcttcggcccctgagggccatcaacagagcc
aaaggtctcaagcacgtagtccagtgtgtgtttgtggccatcaggaccatcggtaacatc
atgatcgtcaccacactgctgcagttcatgttcgcctgcataggagtacagctctttaag
gggaagttttaccgctgcacagacgaagccaagtccagcccagacgaatgcaagggcacc
tacatccattttaaggacggggacgtgaaccagccggccatccataagagagtgtggcac
aacagcgagttcaactttgacaacgtgctgatggctatgatggctcttttcaccgtgtct
accttcgagggctggccttcgttgctgtacaaggccatagactcgaacagggagaacctg
ggtcccatctacaactaccgcatcgagatctccatcttcttcattatctacatcatcatc
atcgctttcttcatgatgaacatcttcgtcggcttcgtcatcgtcaccttccaggagcag
ggagagaaagagtacaagaactgtgagcttgataagaaccagcgtcagtgtgtggagtat
gccctgaaagcccgtccgttgaggaggtatatccctaagaacccctaccagtataagttc
tggtacgtggtcaactccacagggtttgaatacatcatgttcgtcctcatcatgctcaac
acactatgcctggctgtgcagcactatggccagtctgcaacatttaactatgtgatggac
atcctcaacatggtcttcactgctgttttcactgcagagatggttctcaaactcatcgcc
ttcaaaccaaggcactatttcactgacgcgtggaacacgtttgatgccttaattgtagtt
ggtagcgtcgttgatatcgctatcactgaagttaatccaacggaggctcctcagttggat
gagtcggggaacacggaggacagtgctcgcatctccatcaccttcttccgactgttccga
gtcatgcgattggtcaagctgctgagtagaggggagggcatccgtaccctcctgtggacc
ttcatcaagtcctttcaagctctgccctatgtcgcccttctgatcgccatgctcttcttc
atctatgctgtcatcggcatgcaggtgtttgggaaggtagccatggtggacggcacccac
atcaacaggaacaacaactttcagaccttccctcaggccgtgttgctgctcttcaggtgt
gccacgggggaggcgtggcaggagatcatgttggcgtgtgtgtctggaaagttgtgtgac
ccagagtcagactacaaccctggagaggagatgacctgtggagccagcttcgcctacatc
tacttcatcagcttctacatgctctgtgccttcctgattataaatttgtttgtggctgtc
atcatggacaactttgactatctgactcgtgattggtcgatcctgggtcctcaccacttg
gacgagtttaagaggatctggtctgagtacgacccagaggccaagggcaggattaaacat
ctggacgtggtcactctgctccgacgcattcagcctcctctaggcttcggcaaactctgt
cctcatagagtggcctgcaagagactggtggccatgaacatgcctctaaacagcgacggc
accgtcatgttcaatgctaccctgtttgcattagtacgcaccgccctgaagatcaaaact
gatggtaggagactcacacacacaccacaacagcacaacaccacaacagtatcatctgta
cagtttgtgttgatagtgataggacatgtgttgtttacctgtgctgtaggtaatctggag
caggccaacgaggagctgagagcggtcatcaagaagatctggaagaggaccagtatgaag
ctgctggaccaagtggtgccccctgctggtgatgatgaggtaaccgtggggaagttctat
gccaccttcctgatacaggactactttaggaaattcaagaaacgtaaagaggagggcctg
gtaggggtgcacgcctcccaaaacaacacagccatcgctctacaggctggccttcgcaca
ctacatgatatcgggcctgaaatccgacgagcgatatcatgtgacctgcaagatgacgag
ctagtagactttattccagaggaggacgaggagatttataggcgcaacggcggcctgttc
ggtaaccatgtcaaccacgtgaacggggaccaccaccggcgctcgtcaggtcaccagact
aacgccacccagcggcccctgcaggtgcagccgcctccgcactatgcccacatggagcaa
ccggtggggcgtctctgccgggccaatgccatgtcccaccccaaccaccaccaccaccac
catcgccaccaccaccaccacaactcctcctacggcaagtcgcccaagtccaccaatatc
aacttgaacaacgccaacatgtccagtctgcccaacggaggagggcaccaccaccgctac
tatgagcacgctccgccccccgccaacggttaccctggacaccgcggcggcccctactac
cccgactacgacaagccgcctcctcgcggcacgccgcagggacaaagaaggcgctactat
gagacctatgttaggtcccacatgggagatgcccgccaccccaccatccggcgggaggag
gagtttgacgatgacaggtactcaggagagtactatagcggggaggagttctacgaggac
gacagcatgttgtcaggagacagaatgtcctataaggaatacctggacaggtaccagaac
agtgacacggagtacgagactcctagaggctaccaccaccccgacagttactatgacgac
gatgagcagcccctctaccaagacggaaggaggtcgcctaagagacggatgcttcctgcc
acgccccaaggtcacaggaggccctccttcaattttgagtgtctgagaaggcaaggcagt
caggacgagctgccacaccaacgcactgcgctaccactgcacctaatgcagcaccaggtg
atggctgtagcagggctggactccagcagagcccaccgtctctcccccacccgctccacc
cgctcctgggccactccccccgccactccagccagtaaggagcagtcgcccttctacacg
cccctcatcagggtcgatctccccggacgcagggagagcgccgccagcagccaggtgtct
gtgaggaagagttcgtggtacacagacgacccagaatactcccagaggacctactccccc
gtccacctccagctgcccccagagtaccgacagcattaccaccagaagagaggcagtgcc
accagcctggtggaggcggttttgatatcagaggggctcgggagatatgccaaggatcca
aagttcgtggcggccaccaagcacgagatagcggacgcgtgcgagatgaccattgacgag
atggagagcgcggccagccacttgctgaacggcggcttggcgccggcggttaatggggtc
aacgtgtaccccgtcatgagcgagcaggactacgacctccaggacgccacggccagttac
agtgacgaggagccggaggtggagcttagattgccgtacgaggaggacctggcagacgag
atgatctgcatcaccactttatag
DBGET
integrated database retrieval system
