Coregonus clupeaformis (lake whitefish): 121578126
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Entry
121578126 CDS
T08357
Name
(RefSeq) retinoblastoma-binding protein 5-like isoform X1
KO
K14961
COMPASS component SWD1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121578126
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
121578126
COMPASS/SET1 complex (yeast)
121578126
MLL-HCF complex
121578126
MLL3/MLL4 complex
121578126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
WDR55
ANAPC4_WD40
Beta-prop_IFT140_1st
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_LRRK2
Beta-prop_WDR11_1st
WDR54
Beta-prop_TEP1_C
WD_LRWD1
Beta-prop_WDR75_1st
Beta-prop_NUP159_NUP214
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
121578126
NCBI-ProteinID:
XP_041748174
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Position
12:25900802..25944759
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AA seq
555 aa
AA seq
DB search
MNLELLESFGQNYPEEADGTLDCISMALTCIFNRWGTLLAVGCNDGRIVIWDFLTRGIAK
IISAHIHPVCSLCWSRDGHKLVSASTDNIVSLWDVLTGDCDQRFRFPSPILKLQYHPRDL
DKVLVCPMKSAPVLLTLSDSKHVVLPVDDDSDLNVVAAFDRRGEYIYTGNAKGKILVLNT
DTQDLMASFRVTTGTSNTTAIKSIEFARKGSCFLINTADRIIRVYDGREILTCGRDGEPE
PMQKLQDLVNRTPWKRCCFSGDGEYIVAGSARQHALYIWEKSIGNLVKILHGTRGELLLD
VAWHPVRPIIASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDKS
EPEQTGVDAAEDEEVDVTSVDPIVAFCSSDEELEDFKALLYLPIAPEVEDPEENPFGPPP
DAAVQTAPAEDGSSHTGGGDKKQRQPSSEGAPPKKKGRTTTIIELQGVPSDEVHPLLGVK
GDSKSKKKTAGRPKGSKGKEKDFPFRPKPYRGDRVYPDGVEVGGVGMKGRAEGGLTAAGS
LVSQSYKQHDIVGLD
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagagttgctcgagtcattcgggcagaactatccagaggaggcagatggcact
ctggactgtatcagtatggctctgacgtgcatctttaaccgctggggcacgcttctggcg
gtggggtgcaacgatggacgcatcgtcatttgggacttcctgacacggggcatcgccaag
attatcagtgctcacatccatccagtctgctcactttgttggagtcgagatgggcacaag
ctggtgagtgcgtctacagataacatagtgtccctgtgggacgtcctgacgggagactgt
gaccaaaggttccgcttcccctcgcccatcctaaaattgcagtaccacccaagagatttg
gacaaggtcctggtgtgtcctatgaagtcagccccggtactgctgacgctgtcagactct
aaacacgtggttctgcccgtggacgatgactctgacctgaacgtggtggcggcgtttgac
cggcggggggagtacatctacaccggcaacgccaaaggaaagattttggtgctgaacacg
gacacacaggatctgatggcatcgtttcgtgttacgacaggcaccagcaacactacagcc
atcaagtccatagagtttgcacgcaagggcagttgtttcctcatcaacacagcagaccga
atcatcagggtgtatgacgggagggagattctcacctgtgggagagacggggagccagag
cccatgcagaaactacaggacctggtcaacagaactccctggaagcggtgttgtttctct
ggggatggggagtacatcgtggctggttcagcccggcagcatgctctgtacatctgggag
aaaagcattggtaacctggtgaagatcctccatggaaccagaggagaactactgctggac
gtggcttggcaccctgtgcggccaatcatcgcctccatctccagcggagtggtgtccatc
tgggctcagaaccaagtggaaaactggagtgcgttcgccccagactttaaggagctggat
gagaacgtggagtatgaggagagagagtctgagtttgatatagaagatgaggataaaagt
gaacctgaacagacaggtgtggatgctgcggaggatgaggaggtggatgtgacctctgtt
gaccccattgtggctttttgcagcagtgatgaggagctggaagacttcaaggccttgctc
tacctgcccatcgctccagaggtagaggaccctgaggagaatccatttggtccccctccg
gatgcagctgtccagaccgcccccgcagaagatggttcttcccacacagggggcggggac
aagaagcagcgccagccatcctcagaaggagctccgcccaaaaagaagggccgtaccacc
accatcatcgaactacagggggtgcccagtgatgaggtgcaccccttactgggggtgaag
ggagacagcaagtccaagaagaagacagcaggacggccgaaaggctccaaaggtaaagag
aaagacttccccttcaggcccaaaccctacaggggggacagggtctaccctgacggagtg
gaagtgggaggagtagggatgaaaggcagagcggaggggggccttactgctgcagggagc
ctggtttcacagtcctacaaacagcatgatattgtgggtctggactga
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