Coregonus clupeaformis (lake whitefish): 121578210
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Entry
121578210 CDS
T08357
Name
(RefSeq) integrin alpha-9-like
KO
K06585
integrin alpha 9
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04510
Focal adhesion
cclu04512
ECM-receptor interaction
cclu04514
Cell adhesion molecules
cclu04810
Regulation of actin cytoskeleton
cclu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
121578210
04514 Cell adhesion molecules
121578210
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
121578210
09142 Cell motility
04820 Cytoskeleton in muscle cells
121578210
04810 Regulation of actin cytoskeleton
121578210
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121578210
Cell adhesion molecules [BR:
cclu04515
]
Integrins
Integrin alpha subunits
121578210
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Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_1
Integrin_A_Ig_2
Integrin_A_Ig_3
FG-GAP
FG-GAP_3
Integrin_alpha
SARA
Motif
Other DBs
NCBI-GeneID:
121578210
NCBI-ProteinID:
XP_041748348
LinkDB
All DBs
Position
1:87881646..88106065
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AA seq
1026 aa
AA seq
DB search
MGHFMNQKRSLLDVFCVYLSVSVVHSYNIDLEHAIVFRGPDSSFFGYSVLEHYHDNTRWV
LVGAPKANSSYSSSLHTPGAVFKCRVHSNPERRCTEMDLGRGNKPRESCGKTCQGDRDDE
WMGVSLARQDKPNGKILACAHRWKNVFYDSEHILPHGYCSIIPPTLQGRTQALIPCYEDY
KQKYGEEHGSCQAGMAGVFTEELVIMGAPGSYYWTGTVKVYNLSSNTFYNPNKVDVDSHR
YSYLGYAVTAGHFSSPNVIDVAAGAPQHGGEGKVYIFRIDGVSLVKIFQASGKMMGSYFG
SSLCGVDLNLDGLSDLLVGAPMHSTLRDEGQVSVYLSKGNGVMEEAGLLNGDDAYSAHFG
ECITAIGDIDDDGYQDVAIGAPKEDDYGGAVYIYHGDVTGIVTKYSMRLSGQSISPALQM
FGQSISGNVDMDSNGYPDITIGAFMADSVVLLRSRPVITVDVSIYLPVSINISVPQCHEG
PQHLNCFNATVCLLFRGKHLPEHIELLYNLTADVDKRQRTQSSRVYFIQNGAQISSVSNE
LSLDINREDCQQYTAYVKKDVKDVFTAITFEVAYTLGKHVVDGHLDKDLPALTPVLRWRK
GDKMAAKNETWFEKNCLSDDCAADLRLHGKLLLSGLHMRSQLAIGGVRNVSLNVTISNAG
DDAYDTNIYFKFSREVFYINYWQKEEKGISCGLVDLDFLQCSVGFPFMRAQTKYHLAVIF
DTSQLSGENETLQFLVHAKSANPEHRLLDNTLDLSIPLVHEVDTTITGLVTPTSFVYGNS
IDASHFVQLEDMECNFQPLNFTFQVINNGPSRLPGSIVDIRIPNRLAGNGADMFHIMDTQ
VAEGQGNCTSHRNTQPCSIPQDRESIFHTMFAFFTKSGRRVLDCDRPGRACLTISCTLGS
QSKEEAVSIDVKLLLNTEILKRDSSSLIQFVTRGNVRVDGRAIEVLQGLPEDTSLVFEAL
HSQEPRGYVVGWIIAISLLVGILIFLLLAVLLWKMGFFRRRYQEIIEAEKNRKDSDESWD
WVEKNH
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgggtcattttatgaatcagaagaggagccttttggatgttttctgcgtgtatttgtct
gtttctgtagttcactcctacaacattgacttagaacatgctattgtgttccgtggacct
gactcgagtttctttggatactctgttctggagcactatcatgacaatacgcgctgggtt
ctggtaggggcccccaaggccaactcttcctacagcagctcactccacaccccgggagcc
gtgttcaagtgccgtgtccacagcaacccagagagacgctgcacggagatggacctgggc
agagggaataagccccgggagtcttgtgggaagacgtgccagggagacagggatgatgag
tggatgggggtcagcctcgcccggcaggacaaacccaacggcaaaatactggcctgtgcc
caccgttggaagaatgtcttctatgactctgagcatatcctaccccatggttactgttcc
atcatccctcctacgctacagggccggacccaagccctcatcccctgctacgaagactat
aagcagaagtatggggaagagcacggctcgtgccaagcggggatggcaggcgtttttact
gaggagctggtgattatgggagctccaggatcatactattggacaggaacagtcaaggtc
tacaacctgtcctccaacacgttctacaaccccaacaaagtagacgtcgactcacacaga
tacagctatctaggctatgctgtgactgctggacacttctcctctcctaatgtcatagat
gtggctgcaggagctccacaacacggtggagaggggaaagtttacatttttagaatcgat
ggtgtgtctttggtgaagatctttcaggcctcagggaaaatgatgggctcttactttggc
tcctcattgtgtggagttgatctgaacctggacggcctgtcggacctgctggttggagcg
cccatgcacagcacactacgggacgagggacaggtctctgtctacctcagcaagggcaac
ggggtgatggaggaggctggactcttaaatggagatgatgcctacagtgcacactttgga
gagtgcatcactgcaatcggagacatcgatgacgatggataccaagatgtggccatagga
gcacccaaagaagatgactacggtggagcggtctacatttaccatggtgatgtcacagga
atcgtcaccaaatattctatgagactgtctggacagagcattagccccgccctccagatg
ttcggccaatcaatctctggcaatgtggacatggacagcaatggatatccagatattacc
attggtgcgtttatggctgatagcgtggtgttattgaggtcccggccggtgatcactgtg
gacgtgtccatctacctgcctgtctccatcaacatctccgtacctcagtgtcacgaggga
ccacagcacctcaactgtttcaatgctacagtctgtctgctcttcagaggaaaacacctg
ccagaacacatagagttgctgtataacctgacagctgatgtggataagaggcagaggacc
cagtcttccagagtgtactttattcagaacggagcccagatcagctctgtgagcaacgag
ctcagtctggacatcaacagagaggactgccaacagtacactgcatatgttaagaaggac
gtgaaagacgtattcacagccatcacctttgaggtggcctacaccctggggaagcatgtg
gtggacggacacctggacaaagacctgcctgctctcacacctgtactacgctggaggaaa
ggagacaagatggcagcaaagaatgagacatggtttgagaagaactgcctgtctgatgac
tgtgctgctgacctgagactccatgggaaactgctgctttctgggctccacatgcggtct
cagctagccataggaggagtgaggaacgtctctctgaacgtgaccatctccaacgcaggg
gacgatgcctacgacaccaacatctacttcaaattctcaagagaggtcttctatatcaac
tactggcagaaggaagagaagggtatttcctgtggtcttgttgatttagacttcctccaa
tgcagcgtgggatttcccttcatgagagcacagactaagtatcatcttgcagtgatcttc
gacacaagtcagctttcaggggaaaacgagacgttgcagtttttagttcatgcaaaaagt
gccaaccctgagcatagactgttggacaacacgttggatctgtctatcccactggtccat
gaggtggacacaactatcactggtttggtgaccccaacgtcctttgtgtatgggaactcc
atcgatgcctcgcactttgtccagctggaggacatggagtgtaacttccagcctctaaac
ttcacctttcaggtgatcaacaatggccccagcaggttacctggctccatagtggacatc
aggatccccaaccgactggctggcaacggggccgacatgttccacatcatggacacacag
gtggcggaggggcaagggaactgcacctcccataggaacacccagccctgttccatcccc
caggacagagagagtatcttccacaccatgttcgcattcttcaccaagtctggacgcagg
gtcctggactgtgaccggccagggagagcatgtttaaccatctcatgtactctgggctcc
cagtccaaagaggaagctgtcagtatagatgtgaaacttctactaaacacagagatactg
aagagggacagctcgtcgctgatccagttcgtgactaggggtaatgtgagagtggacggg
agggcaatagaggtactgcaggggctaccagaagacacttcactggtgttcgaggcgctc
catagccaggagccaagaggctatgttgttggttggatcattgccatcagcctacttgtg
ggaatactcatcttcctactgctggctgtgctgctctggaagatgggtttcttccgccgg
cgctaccaggagatcatcgaggccgagaagaacaggaaggacagtgacgagagctgggat
tgggtggaaaagaaccactga
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