Coregonus clupeaformis (lake whitefish): 121578244
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Entry
121578244 CDS
T08357
Symbol
trpc4apa
Name
(RefSeq) transient receptor potential cation channel, subfamily C, member 4 associated protein a
KO
K11796
Trpc4-associated protein
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121578244 (trpc4apa)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121578244 (trpc4apa)
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121578244 (trpc4apa)
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
121578244 (trpc4apa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3689
Motif
Other DBs
NCBI-GeneID:
121578244
NCBI-ProteinID:
XP_041748392
LinkDB
All DBs
Position
12:42573364..42588706
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AA seq
775 aa
AA seq
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MATLLGSESPWTGGKRSSRNDNIIAKITHSQIAGQGFSRGTQLPEALLQERDKRAKWHGI
PELLQKLHESSHPNSDLSQTHSVLKELSSLLSMEAMSFVTEDRKSAQESTFPNTYTFDLF
GGVDLLVEILMRPTLTMQKKKPKMNDDLVKDCLSVLYNCCICTEGVTKSLAARDDFVLFL
FTLMTNKKTFLQTATLIEDILGVKKDMIQLEGIPNLSGLVQSFDQQQLANFCRILSVTIS
EPDVGNDDKHTLLAKNAQQKRNASPSRAEVNQVTLLNIPGFIERLCKLATRKVSEATGAS
NFLQELEDWYTWLDNALVLDALMQMATEEAEHSSTESSDESSMATSPLRHRLPQSMKIVH
EIMYKVEVLYVLCVLLMGRQRNQVHKMLAEFRLIPGLNNLFDKLIWRKHTSSDHVVHGQN
ENCDCSPEISFKIQFLRLLQSFSDHHENKYLLLNSQELNELSAISLKANIPEVEALVNTD
RSLVCDGKKGLLTRLLAVMKREPPDSSFRFWQARAVESFLRGATSYADQMFLLKRGLLEH
ILFCIIDSGCKSRDVLQSYFDLLGELMKFNIDAFKRFNKYVSTDDKFQTFMTQINSSLVD
SNMLVRCIVLSLDRFESQTEDVKVVEVLSECCLLSYMARVENRLSFLFRLVNIINVQTLT
QENVSCLNTSLVVLMLARRRGKLPFYLNTLREKEYAEKYPGCLLNNFHNLLRFWQRHYLN
KDKDSTCLENSSCIPFDYWKETVSVLLGSDRTSLCAIASYIDEPFMDLDRDLLED
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcttctggggtccgagtccccttggactggaggaaaacgaagcagtcgcaat
gacaatatcattgcgaagatcacacacagtcagatcgcaggccagggtttcagccgaggg
acacagctcccagaggcgctgctccaggagagagataagagggccaaatggcatggcatc
cctgagctgctgcagaagctccatgagagcagccatcctaacagtgacctctcccaaaca
cacagtgtactaaaggaactatcatccctactttccatggaggcaatgtcttttgtcaca
gaagacaggaagagtgctcaagaatccacctttcccaacacatacacctttgacctcttt
ggtggagtagatctgcttgtagagatcttgatgaggcctacactcactatgcagaagaag
aaacctaaaatgaatgatgacttggtcaaggactgccttagtgttctttacaactgctgc
atatgtacggaaggggtaacaaagagccttgcagccagagatgactttgtcctgtttctc
ttcaccttgatgacgaacaagaagacgtttctacagactgccactttaatcgaggatatt
cttggcgtcaagaaggacatgatccagttggaggggattcctaacctgtctggtctggtc
cagagcttcgaccagcagcagctggctaacttctgtcgcatcctctctgtcaccatctca
gaacccgacgtgggaaatgacgacaaacacaccttgcttgccaagaatgcacagcagaaa
cgcaacgcaagcccctcacgtgcagaggtcaatcaagtgaccctcctgaacatcccgggc
ttcatcgagcgcctgtgtaaactggccaccaggaaggtgtctgaggccaccggggcgtct
aacttcctgcaggagctggaggactggtacacgtggctggacaacgccttggtgctggac
gccctcatgcagatggccacggaggaggctgagcacagcagtacagagtcatcagatgag
agttcgatggccaccagccctctgaggcaccgtttgccccagtccatgaagattgtccat
gagatcatgtacaaggtggaggtgctctatgtgctctgtgtgctgctaatgggccgtcag
aggaaccaggtacacaagatgttagcagagttccgtctgatcccaggcctcaacaacctg
tttgacaagctgatctggaggaagcacacctcgtccgatcacgtggtgcatggccagaac
gagaactgtgactgcagtccggaaatatcattcaaaatccagtttctgaggcttctccag
agcttcagtgaccaccatgagaacaagtacctgcttctgaacagtcaggagctgaacgag
ttgagtgccatttctctgaaggccaacataccggaggtggaggccttagtcaatacagac
aggagtctagtgtgtgatgggaagaagggtctcctcacacgtctgctcgccgtcatgaag
agggaacctccagactcctccttcaggttctggcaggccagggcagtggagagtttcctc
cgtggagccacctcctatgcggaccagatgtttctgctgaagagggggctactagaacac
atcctgttctgcatcatagacagcggctgtaagtcgagagacgtcctgcagagctacttt
gacctgctgggggaactcatgaagttcaacatcgacgccttcaagaggttcaacaaatac
gtcagcacagacgacaagttccagaccttcatgacccagatcaacagttccctggtggac
tccaacatgctggtgcgctgcatcgtcctttccctcgaccgcttcgagagccagacagag
gacgtgaaagtggtggaggtgctgtctgaatgctgtctgctgtcctacatggcccgggtg
gagaacaggctatccttcctcttcaggctggtcaacatcatcaacgtgcagactctcaca
caggagaatgtgagctgtctgaacaccagcctggtggtcctgatgctagccaggaggcgg
ggcaagctgcccttctacctcaacacattgagagagaaggagtatgcagagaaatacccc
ggctgcctgctaaacaacttccacaaccttctgcgcttctggcaacgccactacctcaac
aaggacaaggacagcacctgtctggagaacagctcctgcatcccctttgactactggaag
gagaccgtgtcagtgctgctgggctcagacaggacttctctgtgtgccatagccagctac
atagacgagcccttcatggacctggacagggacctgctggaggattaa
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