Coregonus clupeaformis (lake whitefish): 121578325
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Entry
121578325 CDS
T08357
Name
(RefSeq) ATP-dependent RNA helicase DDX19A
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121578325
03015 mRNA surveillance pathway
121578325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121578325
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121578325
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
121578325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF1028
HNF-1_N
Motif
Other DBs
NCBI-GeneID:
121578325
NCBI-ProteinID:
XP_041748570
LinkDB
All DBs
Position
12:complement(61155426..61167099)
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AA seq
495 aa
AA seq
DB search
MATDSWAQAVDEQEAAAESIGSLQIKDKPEENGTASTATTTTTTAAASASTPAKTEGGEG
DKTGEEDHKDDKAAQSLLNKLIRSNLVNTTNQVEVLQRDPNSPLYSVKSFEELRLKPQLL
QGVYAMGFNRPSKIQENALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSHVDPNNKFPQ
CLCVSPTYELALQTGKVIEQMGKYYSEVKLVYAIRGNKLQRGTQLQEQVVIGTPGTMLDW
CLKFKFIDPKNIKVFVLDEADVMIATQGHQDQSIRIQRMLPKQCQMLLFSATFEETVWNF
AQRIVPEPNIIKLKREEETLDTIKQYYVLCNSKEEKFMALCNIYGAITIAQAMIFCHTRK
TAGWLAGELSREGHQVALLSGEMQVEQRAAVIDRFREGKEKVLVTTNVCARGIDVEQVSV
VINFDLPVDRDGNPDNETYLHRIGRTGRFGKRGLAINMVDSKFSMNVLNKIQDHFNKKIE
KLDTEDLDEIEKIAS
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atggcaacggactcctgggcccaggctgtggacgaacaagaagccgcggcagaatcgatt
ggtagcctgcaaatcaaagacaagcctgaggaaaatggcacagcaagcacggcaacgaca
acaacaaccacagcagcagcaagtgcttcaacgcctgcaaagacagaaggaggcgaggga
gacaaaacaggggaggaagaccacaaagatgacaaggcggcacaatcgttgttgaataag
ttgatacgcagtaatctagtgaacacaaccaatcaagtagaggtccttcagcgggatcct
aactctccactctactctgtcaaatcatttgaggagctgcggcttaaacctcagctgctt
cagggagtatacgccatgggcttcaaccgcccctccaaaatccaagagaacgctttaccc
atgatgctcgcagaacccccacagaacctgatagcccagtctcagtcggggacggggaag
acggctgccttcgtcctggccatgctcagtcacgtcgaccccaacaacaagtttcctcag
tgtctgtgtgtgtctcccacttatgagctggccctgcagacagggaaggtcattgagcag
atggggaagtactactcagaggtcaaactagtctacgccatcagaggaaacaaattgcag
agaggcacgcagctccaggagcaggtagtgattgggacgccaggcaccatgctggactgg
tgtctgaagtttaaattcatcgaccccaagaatattaaagtgtttgtcctggatgaggct
gatgttatgattgctacacagggacaccaggaccagagcatacgcattcaaaggatgcta
cccaaacagtgtcagatgctcctgttctctgccacgtttgaggagactgtgtggaacttt
gcccagcgcatcgtcccagaacccaacatcatcaagctgaagagggaagaggagacgctg
gacaccatcaagcagtactacgtcctctgtaacagcaaagaggagaagttcatggccctc
tgcaacatctacggagccatcaccattgctcaggccatgatcttctgtcatacaaggaag
acggcgggctggctggcaggtgagctgtcccgggagggacaccaggtggcgctgctcagt
ggggagatgcaggtggagcagagagctgctgtcatcgaccgcttcagagaaggaaaggag
aaggtcctggtcaccaccaacgtctgcgccagaggtatcgacgtggagcaggtttccgtg
gtgataaactttgacctgccggtggacagagacggtaacccagacaatgagacatacctg
caccggattggccgcacgggtcgttttgggaagaggggattggccatcaacatggtggac
agcaagttcagcatgaacgtcctcaacaagatccaggatcacttcaataagaaaattgag
aagctggacacagaagatctggatgagattgaaaaaatcgccagctga
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