Coregonus clupeaformis (lake whitefish): 121578747
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Entry
121578747 CDS
T08357
Name
(RefSeq) LOW QUALITY PROTEIN: transcriptional repressor CTCF-like
KO
K23195
transcriptional repressor CTCF
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121578747
03036 Chromosome and associated proteins [BR:
cclu03036
]
121578747
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
121578747
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
121578747
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
Zf-C2H2_ZNF451_C
zf-C2H2_REST
zf-C2H2_7th_ZNF462
zf-met
Zf-C2H2_ZNF451
zf-C2H2_6
zf-C2HE
zf-C2H2_15
LIM
DTHCT
BNIP2
C1_1
A24_N_bact
zf-C2H2_ZN142
DUF6318
Zn_ribbon_DUF2089
DUF7128
Zn_ribbon_FGT1_2
Motif
Other DBs
NCBI-GeneID:
121578747
NCBI-ProteinID:
XP_041749073
LinkDB
All DBs
Position
12:complement(41475065..41477436)
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AA seq
560 aa
AA seq
DB search
MNGIASTYNTEGDKDNMDVSVYDFEEEQQEGMLSEVNAEKVVGNMKPPKPTKIKKKGVKK
TFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKC
QDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLC
SYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDT
VIARKSDLGVHLRKQHSFIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYCC
RQERHMLMHRRTHTGEKPYSCSQCEKTFRQKQLLDMHFRRYHDPNFVPTAFVCTKCGKTF
TRRNTMARHAENCNGDPGEGENGTPPKRGRGGRKRKMRSRKDDDDDDSEDNADPELDDID
EEDEEAEAALLEDEEEEEEEMKLEQAPPTKPIPAPVEPPVKRKRGRPPKNAPKPASPAKA
SKATPRGKAAAAAAIIQVEDENTGAIENIIVKNEPEAEQAAIEVVVDQSEEAEARVALPV
AEVASNGDLTPEMILSIMDR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaatggaatagcctcaacctacaacacagagggggacaaagacaacatggatgtgtct
gtctatgactttgaggaggagcagcaggaggggatgctctctgaggtcaacgcggagaag
gtggtgggcaacatgaagccccccaaacccaccaagatcaagaagaagggtgtgaagaaa
acattccagtgtgagctgtgtagctacacctgtccccgccgctccaacctggaccgacac
atgaagagccatacggacgagaggccccacaagtgccatctgtgtggaagggccttcagg
accgttaccctgctgaggaaccacctcaacacacacacaggtaccagaccacacaagtgt
caagattgtgacatggcctttgtgaccagcggagagctggtccgacatcgtcgctacaag
cacactcatgagaaacccttcaagtgctccatgtgtgactatgccagtgtggaggtgagc
aagctgaagcggcacatccgttcccacaccggggagcgtccgttccagtgcagtctgtgc
agctacgccagcagagacacctacaagctgaagagacacatgaggacacactcgggagag
aagccatatgaatgctacatctgccacgcccgtttcacccagagtggaaccatgaagatg
cacatcctgcagaagcacacagagaacgtggccaagttccactgcccccactgtgacaca
gttatcgcccgcaagagtgacctgggtgtccatctgcgtaagcagcactcgttcattgag
cagggcaggaaatgccgttactgtgatgctgtgttccacgagcgctacgctctcatccag
caccagaagtcccacaagaatgagaaacgcttcaagtgtgaccagtgtgactactgctgc
agacaagagcgccacatgctgatgcacaggcgcacgcacacaggagagaagccttactcc
tgtagccagtgcgagaagaccttccgtcagaagcagctcctggacatgcacttccggcgc
taccatgaccccaactttgtgccgactgcctttgtgtgcacaaagtgtggcaagaccttc
acccgcaggaacaccatggccagacatgcagagaactgtaacggggatcctggtgaagga
gagaatggaaccccacccaagagaggacgaggtgggaggaagaggaagatgcgctcaagg
aaggacgatgatgacgacgacagtgaggacaatgctgatcctgagctggatgacattgat
gaagaggatgaggaggctgaggcggcactgctggaggatgaagaagaggaggaggaggag
atgaagttggagcaggctccacccaccaagcctatccctgcccctgtggagcctcccgtg
aagaggaaacgcggtagaccccccaagaatgcgcccaaacccgcctcacctgccaaagct
agcaaggctacccctaggggcaaggctgctgcagcagcagccatcatccaggtggaggat
gagaatacaggtgccatagagaacatcatagtgaagaatgagccagaggctgagcaggct
gccatagaggtggtggttgatcagtcagaggaggcagaggcaagggtggcgctgcctgta
gcagaggttgcgtccaacggagatctcacccctgagatgatcctcagcataatggaccga
tga
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