Coregonus clupeaformis (lake whitefish): 121578870
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Entry
121578870 CDS
T08357
Name
(RefSeq) E3 SUMO-protein ligase ZBED1-like isoform X1
KO
K24637
zinc finger BED domain-containing protein 1 (E3 SUMO-protein ligase ZBED1) [EC:2.3.2.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121578870
04121 Ubiquitin system [BR:
cclu04121
]
121578870
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys2His2 BED
121578870
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
121578870
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Dimer_Tnp_hAT
DUF659
hAT-like_RNase-H
DBD_Tnp_Hermes
Motif
Other DBs
NCBI-GeneID:
121578870
NCBI-ProteinID:
XP_041749129
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Position
13:complement(16492731..16495292)
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AA seq
533 aa
AA seq
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MFSQRLGQNSARAKNITATIAKFICKDMRPYSVVENPGFREMIQTLEPRYTIPSRPHFSE
KVIPALYESTKNDVKLSLSQAERVAITTDGWTSCSNQGYVTITSHHIDPEWKIKTFVLLT
RVLNEAHTGKNIGALLREACMEWKIYDKNPAIVTDNDRNMIVAGAEAQFSPHITCFAHTL
NLASQKCLGVDRASRLLGKVRKIVGYFHRSPIACHALQEKQTLMDLPKHKLIQDIITRWN
SSFEMLERFLEQQPAIMATLMSKDLRKGVTDVGTLSERDIANMDDIVQLMGPVKMATTVM
CEEDQPTLSVIAPLQAKLLKHLQPCEDDSTLVAEIKRVMASDLSTRYRGTQDALNIASAL
DPRFKELPYLEKEDREQVYTKLVFEAEVSHQMQAMGNQEEDEGSSSTKLSGFNEETTAPN
ESPPCKKKALDALFGDSFTQRERKSTSETARAEVLKYRAKDALPLTENAMKWWRSQEKEL
PVLSTLAKRYLCIPGTSVPAERVFSTAGDIVNAQRSVLQPDHVDQLIFLKNNL
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgtttagtcagagactaggccaaaactcagctcgggcgaaaaacatcacggcaacaatt
gccaagtttatctgcaaagacatgcgaccctacagtgtggttgaaaatccgggattccgt
gaaatgattcaaacattggagccaaggtacacaataccaagccgaccacacttctcagaa
aaggttattcctgcattgtacgaaagtactaagaatgatgtgaagctgtcgctttctcaa
gctgaacgagtagcgataacgacagatggctggacgtcatgctcaaatcaagggtatgtg
acaattacctctcatcacattgatccggagtggaaaattaagacctttgttctgctaacc
agagttttaaatgaagcccatactggtaaaaatattggcgcgttactgcgtgaagcctgc
atggagtggaaaatctacgacaagaatcctgccatcgtcacagataacgacaggaatatg
attgtggccggtgcagaagcccagttcagtccacacattacctgcttcgcacatacactc
aaccttgcctcgcagaagtgtttgggggtggaccgtgcttccaggttgttggggaaagtg
cgaaaaattgttggatattttcaccgcagcccgattgcatgtcacgccctacaggaaaaa
caaactctgatggatttaccaaaacataaactgatccaagacataatcaccagatggaac
agttcattcgaaatgcttgaacgttttttggaacaacagccagctataatggcaactctg
atgtccaaggatctacgaaagggggtcacagatgtaggcacgctgagtgagagggatatt
gccaacatggatgacattgttcagttgatgggtcctgtcaaaatggcaaccactgtgatg
tgtgaagaagaccagccaactctctctgtaattgctcctcttcaagcaaaactgctgaaa
cacctacagccatgcgaagacgactcaaccctggttgcagagattaagagggtgatggcc
agtgacctctccacacgctacagaggcacccaagatgctctcaacatagcatcagcgttg
gacccgcgatttaaagaactgccctacctggaaaaagaggacagagaacaggtctacaca
aaactggtttttgaggcagaagtgtcccaccagatgcaagcaatgggaaatcaggaggaa
gacgagggaagctcaagcacaaagctgtcaggattcaatgaagagaccacagctccaaat
gagtcacctccttgtaagaagaaagccttagatgcgctgtttggcgattccttcacccaa
agagaaagaaaatcgacaagcgagacagccagagcagaggtgttaaagtaccgagcaaaa
gatgcgttgcctttgactgaaaatgccatgaagtggtggagatctcaggagaaagagcta
cctgtactttccacccttgctaaacggtacctgtgcattccaggcaccagtgtgccagca
gaacgagtttttagtactgctggcgacatagtgaacgcacagagaagtgttctgcagcca
gatcatgttgatcagttgatatttttgaaaaataatctgtag
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