Coregonus clupeaformis (lake whitefish): 121579094
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Entry
121579094 CDS
T08357
Name
(RefSeq) high mobility group-T protein
KO
K10802
high mobility group protein B1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03410
Base excision repair
cclu04140
Autophagy - animal
cclu04217
Necroptosis
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121579094
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121579094
09143 Cell growth and death
04217 Necroptosis
121579094
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cclu03036
]
121579094
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121579094
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121579094
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Nucleosome assembly factors
HMG (high mobility group) proteins
121579094
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
121579094
MMR (mismatch excision repair)
Other MMR factors
121579094
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121579094
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box_2
HMG_box
HMG_WDHD1
HMG_box_5
Dicty_REP
NOA36
Motif
Other DBs
NCBI-GeneID:
121579094
NCBI-ProteinID:
XP_041749322
LinkDB
All DBs
Position
13:5911379..5926218
Genome browser
AA seq
203 aa
AA seq
DB search
MGKDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFE
DLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS
IGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAYRNKGKVPVSMPAKAAAPTK
DDDDDDDDDDDEDDDEDDDEDDE
NT seq
612 nt
NT seq
+upstream
nt +downstream
nt
atggggaaagatccaacgaaaccgaggggcaagatgtcctcctatgcctactttgtccag
acctgtcgggaggagcacaagaagaagcacccagaagcttccgtcaacttctccgagttc
tccaagaagtgctctgagagatggaagaccatgtccgccaaggagaaggggaagtttgag
gatctggccaagctggacaaggtgcgctatgagagggagatgaggagctacattcctccc
aagggagagaagaagaagaggtttaaggaccccaacgcccccaagagaccatcgtctgcg
ttcttcatcttctgtgctgacttccgaccccaggtgaagggggagaccccgggcctgtct
atcggtgatgtggccaagaagctgggagagaagtggaataacctaacagcggaggacaag
gtgccctatgagaagaaggctgccaagctgaaggagaagtacgagaaggacatcactgcg
taccgcaacaagggcaaggtgcccgtcagcatgccagcgaaggccgccgcccccaccaag
gacgacgacgatgatgacgacgacgatgatgatgaggacgatgatgaggacgatgatgag
gatgacgagtag
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integrated database retrieval system