KEGG   Coregonus clupeaformis (lake whitefish): 121579094
Entry
121579094         CDS       T08357                                 
Name
(RefSeq) high mobility group-T protein
  KO
K10802  high mobility group protein B1
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03410  Base excision repair
cclu04140  Autophagy - animal
cclu04217  Necroptosis
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    121579094
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    121579094
  09143 Cell growth and death
   04217 Necroptosis
    121579094
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:cclu03036]
    121579094
   03400 DNA repair and recombination proteins [BR:cclu03400]
    121579094
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cclu04147]
    121579094
Chromosome and associated proteins [BR:cclu03036]
 Eukaryotic type
  Nucleosome assembly factors
   HMG (high mobility group) proteins
    121579094
DNA repair and recombination proteins [BR:cclu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     121579094
   MMR (mismatch excision repair)
    Other MMR factors
     121579094
Exosome [BR:cclu04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   121579094
SSDB
Motif
Pfam: HMG_box_2 HMG_box HMG_WDHD1 HMG_box_5 Dicty_REP NOA36
Other DBs
NCBI-GeneID: 121579094
NCBI-ProteinID: XP_041749322
LinkDB
Position
13:5911379..5926218
AA seq 203 aa
MGKDPTKPRGKMSSYAYFVQTCREEHKKKHPEASVNFSEFSKKCSERWKTMSAKEKGKFE
DLAKLDKVRYEREMRSYIPPKGEKKKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS
IGDVAKKLGEKWNNLTAEDKVPYEKKAAKLKEKYEKDITAYRNKGKVPVSMPAKAAAPTK
DDDDDDDDDDDEDDDEDDDEDDE
NT seq 612 nt   +upstreamnt  +downstreamnt
atggggaaagatccaacgaaaccgaggggcaagatgtcctcctatgcctactttgtccag
acctgtcgggaggagcacaagaagaagcacccagaagcttccgtcaacttctccgagttc
tccaagaagtgctctgagagatggaagaccatgtccgccaaggagaaggggaagtttgag
gatctggccaagctggacaaggtgcgctatgagagggagatgaggagctacattcctccc
aagggagagaagaagaagaggtttaaggaccccaacgcccccaagagaccatcgtctgcg
ttcttcatcttctgtgctgacttccgaccccaggtgaagggggagaccccgggcctgtct
atcggtgatgtggccaagaagctgggagagaagtggaataacctaacagcggaggacaag
gtgccctatgagaagaaggctgccaagctgaaggagaagtacgagaaggacatcactgcg
taccgcaacaagggcaaggtgcccgtcagcatgccagcgaaggccgccgcccccaccaag
gacgacgacgatgatgacgacgacgatgatgatgaggacgatgatgaggacgatgatgag
gatgacgagtag

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