Coregonus clupeaformis (lake whitefish): 121579137
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Entry
121579137 CDS
T08357
Name
(RefSeq) E3 ubiquitin-protein ligase RNF43
KO
K15694
E3 ubiquitin-protein ligase RNF43 [EC:
2.3.2.27
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
121579137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cclu04121
]
121579137
Enzymes [BR:
cclu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
121579137
Ubiquitin system [BR:
cclu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
121579137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZNRF_3_ecto
zf-RING_2
zf-RING_11
zf-C3HC4_2
zf-rbx1
zf-C3HC4
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-ANAPC11
FANCL_C
Motif
Other DBs
NCBI-GeneID:
121579137
NCBI-ProteinID:
XP_041749392
LinkDB
All DBs
Position
13:complement(8591257..8791160)
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AA seq
872 aa
AA seq
DB search
MIVLQRRLAGLWPWLLMAALQVVFGQTGLELAAAVETERSTIRAVIKVTLLRHEPTGKPI
TLEGLFVGGSASSAEGKLMQSHPLSLCNTSEDERQESDFISIVKLESPERKVHQCLPLLD
KARLALERGAQAVIFDVTDDVTAEFQLLKSDSLPRPVVLMQAEDAEKLMDLVNRNEEARV
HIDIKREDPKWPHYDVVVLLTIVLAILAIVSIFAFRYRSKSNRTWDSVHQQTMRAISRLE
TRTYSSQGCGGSQRHRGGRGSNSSSNSNPVCAICLEEFLEGQDLRIVSCAHEFHKECVDP
WLLQHRTCPLCMHNIMGSELSRQPRRSRLQQTPEHSQGFLHPHPYPHAFPQHQIPFSMRP
HYPHGPSGPYPSLGHYSGSPPLDPQTLRFLPSRPLGSGCGYLHPAEGPGRPHRAGGSCRT
AGHPMGSHYGPGPRRSCHTYRSGCPAQRSASSSRLHPSSDPQARASAGGVHSRGDEGGSC
SGGSYRTERSGYLADGPASDSSSGPCHGSSSDSVLNCTDVSLQGVYGSWSTFRSSLSSDY
DPLVYYGPGPGPGRTGHRDSMEAGVQRPKSLDSVMNRDRGGRGGGGCSEEQQQAVFSHVH
YHRHRHHHYREDGEREHAQGQGQGPGMGSDEELGAAAAAIGPVSGSPPALDKDYPVCPLK
DSPCQCPKADHTDCRGAHGHGTEGQDHEFSPPSGPPPVLVPPAPLPPPPPCCHQGQSHGG
HPHQRAGRLGGCVLDGPSVRFHQSLDLQDDCSIHIHYGQGYCCPPPDLPPGLLPMPVPLI
LDSGGMGPLGGLEDWPCCGGPHHVVWQKRVQQAHSEPQLLGPGLGAPMDRTPPPCSRRHH
GHQSPAHDRNTDFCLYCQTLHNNQGSEEESGV
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgatcgttctccagcggcgactggccgggctctggccgtggctgctcatggcggccctg
caggtggtgttcggccagacgggcctggagctggcggcggccgtagagacggagcgctcg
accatcagggctgtcatcaaggtgacactgctgagacacgagcccacggggaagcccatc
actctggaagggctgttcgtcggagggagcgccagttctgcagaggggaagctcatgcag
tcccaccctctatccctatgcaacaccagtgaagatgagcgccaggagtcagacttcatc
agcatcgtcaagctggagagtccggagcgcaaggtgcatcagtgtctgcccctgctcgac
aaggctcgcctggcgttggagagaggggctcaggctgtcatctttgatgtcaccgatgat
gtcacagctgaattccagcttcttaagtcagactcccttccgcgtccggtggtgctgatg
caggctgaggatgccgagaagctgatggacctggtcaacaggaacgaggaggccagagtt
cacatcgacatcaagagggaggatcccaaatggccccactatgatgttgttgtcctgctc
actatagtccttgctattctggccatcgtttcaatctttgctttccggtaccgaagcaag
tccaacagaacctgggactcagtccaccagcagacgatgcgagccatcagtcgtctagag
acgcggacatacagctctcagggctgcgggggttcacagcgccaccgtgggggccggggg
tcaaatagcagctccaactccaaccccgtttgtgccatctgtctggaggagttcctggag
ggacaggacctgaggatcgtctcgtgtgctcatgagttccataaggagtgtgtggacccc
tggctgctgcaacaccgtacctgtcccctctgcatgcacaacatcatgggttcagagctg
tctcgtcagccacggaggagcagactgcagcagacccccgagcacagccagggttttctg
cacccccacccctacccccacgccttcccacagcaccaaatccccttctccatgaggcct
cactacccccacggcccctccggtccctacccctccttgggccactatagcggctccccg
cctctggacccccagaccctccgcttcctccctagccggcccctgggctctggctgcgga
tacctccaccctgcagagggccccggaaggccccacagagccgggggcagctgcaggaca
gcaggccaccctatggggtcccactacggccccgggccccgccgctcctgccacacctac
cgctccggctgccccgcccagcgcagcgcctccagttccaggctccacccctcctctgat
ccccaggcccgcgcctccgcaggtggggtccacagccggggggacgaggggggcagctgc
tctggggggagctaccggacagagcgcagtggctacctggctgacgggccggccagtgac
tccagctctgggccctgtcacggctcctccagtgactcggtgctcaactgtaccgacgtg
tccctgcagggtgtctacggcagctggtccacgttccgcagctccctgagcagtgactat
gacccgttagtgtactacgggccggggccggggccggggcggacaggccacagggacagc
atggaggcaggggtccagagacccaagtccctggactcagtgatgaacagagacagagga
ggaagaggaggaggagggtgctctgaggagcaacagcaggctgtgtttagccacgtccac
taccaccgccaccgccaccaccactaccgagaggatggggagcgggagcatgcccaggga
cagggccaggggccaggcatggggtcagacgaggagctgggggctgctgctgctgctatt
ggccctgtgtcaggttctcccccggctctggacaaagattacccagtgtgccctctgaaa
gacagcccctgtcagtgtcctaaggcagaccacacagactgtagaggggcccatggccac
gggaccgagggtcaggaccatgagttcagtcccccctcaggcccccctcccgtcctggta
cctccagcccccttaccacccccacccccctgctgccaccagggccagagccacggaggc
cacccccaccagagggcaggccggctgggcggctgcgtgctcgacggcccctcagtgcgt
ttccaccagagcctggacctgcaggacgactgtagcattcacatccactacggccagggc
tactgctgccccccgcccgacctgccccccggtctgctccccatgcctgtgcccctcatc
ctggactctggaggaatggggcccctggggggcttagaggactggccctgctgtggaggg
ccccaccatgtggtgtggcagaagcgggtgcagcaggcccactctgagccccagctgctg
gggcccgggctgggggcccctatggacagaacaccgcccccatgcagcaggcgtcaccac
ggtcaccaaagcccagcgcacgaccgcaacacagacttttgtttatactgtcaaacatta
cacaacaatcagggatcagaggaggagtccggcgtgtga
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