Coregonus clupeaformis (lake whitefish): 121579184
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Entry
121579184 CDS
T08357
Name
(RefSeq) transcription factor SOX-30 isoform X1
KO
K09271
transcription factor SOX15/30
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121579184
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121579184
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
121579184
NCBI-ProteinID:
XP_041749481
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Position
13:9545851..9550561
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AA seq
633 aa
AA seq
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MDRHPKRRAQMTFKTSEQSKNKDDSKKNTNESEGPASSTEKHRGDGEQKRPVGRPKGSGS
SGNSEAVQVRPKVIFKADKCGGDGYLMATSSTHLKEAIQGRPVTFEKERAPSSVNKQSKA
TSDHPMNSQVQVIKEEIITPAPGQANVKVKVVQEPTTHRQGCPPAAPTIDFSKPIHVVHE
KTLTVLDGKAITLSKVPYPPPVHVNVQPLPVKKVNTRGTNLTMPPSEAENLEVTRSVDRN
GYIKRPMNAFMVWARIHRPALSKANPTANNADVSVQLGAEWSKLTEEEKRPYYEEARQLK
DKHRHEFPGWIYQPRPGKIKGYPSVMSFAPQPSCSSAGTSVPGAESCPMTMAMATTTTSS
SVANTRATGSNDHGVQGATVAAPNASQSTSPVSIFFQTTACPHPHPTATTSGAKPAERKR
EARHCGSNLEEAPKPRKISSQQAYYNSASEIPSTIMPSSSRGLQIPLSNLAYPHMYPPSP
MQHPVGLFPTPCFPFAPPFFMPGPQFYPTGSYPYPHGPYSYPVLQPQEFSNPMATPMSTP
GYPYDDNYDQHESTFSLLNRDYPFRQRGEGGQRCQGQGQAPTTSELLGSVPPLDVRALEN
VFTNSAPENPASVQEVQVTNEEDGEEVRVMRIL
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atggataggcatcccaagcgaagagctcaaatgacattcaagacaagtgaacaaagtaaa
aacaaagatgacagtaagaaaaataccaacgaaagcgagggccctgcatcttcaacagag
aagcatcgaggtgatggagaacagaagagaccggtgggtaggcctaaaggtagtggaagt
tctggaaatagtgaagctgttcaggttaggcctaaagttattttcaaagctgataaatgt
ggtggtgatgggtatctaatggccacaagttcaacacacctcaaggaagccattcaaggt
cgaccagttacatttgaaaaggagagagcaccatcatcagtcaataaacagagtaaagcc
acatctgatcatcccatgaactctcaagtgcaggtcatcaaggaggagatcatcacacct
gctccaggtcaggccaatgtcaaggtaaaagttgtccaagaaccaacaacgcatcgtcaa
ggatgtccacctgcggctcccactatagacttctccaaaccgatccatgttgtccacgaa
aaaaccttgacagtattggatggtaaagccataacgctcagcaaagttccatacccacca
cctgttcatgtgaatgttcagccacttccagtaaagaaggtgaacactagagggacgaat
ctcaccatgccaccatcagaagcagaaaatctggaagtaacacggagtgtagacagaaat
ggctatatcaaaaggcctatgaatgcgttcatggtctgggcgagaatccacagacctgcc
ctgtccaaggccaacccaacagccaacaacgcagacgtcagtgtgcagctaggagcagag
tggagcaagctcactgaggaagagaagaggccctactatgaggaagcacgtcaactcaaa
gacaagcacagacatgagttccctggttggatctatcagcccagacctggaaaaataaag
ggctacccttctgtgatgtccttcgcccctcaaccatcctgcagctctgcagggacaagt
gttcctggggctgagtcttgtcccatgaccatggccatggccaccactaccaccagctcc
tctgttgcaaacacacgggccacaggctctaatgaccatggtgtccagggtgctacagtg
gcagctccaaatgcctctcagagtaccagcccagtctccatattcttccagactactgcc
tgcccacatccccacccaacagccactacctctggtgctaagcctgcagaacgcaagcgt
gaagccagacactgtggcagcaaccttgaagaagctcccaaacccaggaaaatcagcagt
caacaggcgtactacaattctgccagtgagattccctctacaatcatgccatccagctcc
agaggtctccaaataccactctctaacctggcttacccacacatgtatcctccatctccc
atgcaacacccggtgggcctcttccccaccccttgcttcccctttgctccgcccttcttc
atgcctggaccccagttttatccaacaggatcatacccttacccacatggcccatactcc
tacccagttctccaaccccaggagttctcaaaccccatggctactcctatgtctactccg
ggctacccctatgatgacaactacgatcagcatgagtccacgttctcccttctcaacaga
gactacccgtttcggcagagaggggagggcgggcagagatgtcaaggtcaagggcaggcc
cccactacctctgagctcctgggttcggtcccaccactggatgtgcgtgccctggagaat
gtcttcaccaactctgcgccagagaaccctgccagtgtccaagaggtccaagtcaccaat
gaggaggacggggaagaggtgcgcgtgatgagaattctctag
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