Coregonus clupeaformis (lake whitefish): 121579214
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Entry
121579214 CDS
T08357
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-6
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
cclu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121579214
04082 Neuroactive ligand signaling
121579214
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121579214
Ion channels [BR:
cclu04040
]
Ligand-gated channels
GABA-A
121579214
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
121579214
NCBI-ProteinID:
XP_041749542
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Position
13:complement(28907022..28922882)
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AA seq
468 aa
AA seq
DB search
MEIITVDHGFLTVECLRGMAFVFTCFFLSCVSNVWGNHAKSTDTENIYLDNITRVLDRLL
DGYDNRLRPGFGGPVTEVKTDIFVTSFGPVSDVEMEYTMDVFFRQTWIDERLKFEGPIEI
LRLNNLMVSKIWTPDTFFRNGKRSISHNMTTPNKLFRIMQNGTILYTMRLTINAECPMRL
MNFPMDGHACPLKFGSYAYPMSEIVYTWKKGPLFSVEVPEESSSLLQYDLIGQTVSSERL
KSNTGEYVVMTVHFHLQRKMGFFLIQTYIPCIMTVILAQVSFWINKESVPARTVFGITTV
LTMTTLSISARHSLPKVSYATAMDWFIAVCFAFVFSALIEFAAVNYFSTLQANQELRKAA
AIKAAQEAAEAGRSDGEFSSDASSMLKKRMNSTPHFERPAEVFPNPPVNAQAFLQQGSAM
PSNNLLTGTSIIDKYSRILFPLSFGAFNLVYWIVYLTKDTMEMTRDSV
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggaaattataacagttgaccacggctttttgactgtggagtgtctacgaggcatggct
ttcgttttcacttgtttttttctgtcctgtgtgagcaatgtttggggaaatcatgcgaaa
tcaacagatactgagaatatctatttggataacatcacgcgtgtattggatagattacta
gatggatatgacaacagactgcgacctggatttggaggtccagttactgaggtcaaaaca
gacatctttgtcacaagctttggtccagtgtcagatgttgagatggagtacactatggat
gtatttttccgtcaaacgtggattgacgagaggttgaaattcgagggccccattgagatt
ctgcggctcaacaacctcatggtcagcaagatctggacaccagacacattcttccggaat
ggcaagaggtccatctctcacaacatgaccactcccaacaagctgttccgcatcatgcag
aacggaactatcctatacactatgagattgactataaatgcagagtgtcccatgcgactg
atgaacttcccgatggacggccatgcctgtcctctcaagtttggtagctatgcctacccc
atgagtgaaattgtgtacacatggaaaaaaggaccactgttctctgtggaagtaccagag
gagtcctccagcttgctacagtacgatctaataggacagacagtatccagtgagaggtta
aaatccaacacaggtgaatatgtagtcatgactgttcacttccacctgcaaaggaagatg
ggcttcttcttgattcagacatacatcccctgtatcatgaccgtgatcctggctcaggtc
tctttttggatcaataaggaatcggttcctgctcgaactgtattcggcattaccacagtg
ctgaccatgaccacactcagcatcagcgcccgccactctttgcccaaagtctcctatgcc
acggccatggactggttcatcgccgtgtgtttcgccttcgtcttctcagccctcatcgag
tttgccgcagtcaactacttctccacgctgcaggccaaccaggagctccgcaaggcggcc
gccataaaggcagcccaggaggcagcagaggctgggaggagcgacggggagttctcttcg
gacgccagcagtatgctgaagaagaggatgaactccacgcctcactttgagagaccagca
gaggtgttccctaaccctccagtgaatgcccaggccttccttcagcaaggctcagccatg
ccgtccaacaacctactgacaggcaccagcatcatagacaagtactcgcgcatcctcttc
cctctgtcgttcggggccttcaacctggtgtactggatcgtttatctcaccaaggacacc
atggagatgacaagggacagcgtgtga
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