Coregonus clupeaformis (lake whitefish): 121579229
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Entry
121579229 CDS
T08357
Name
(RefSeq) interferon regulatory factor 1 isoform X1
KO
K09444
interferon regulatory factor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121579229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121579229
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
121579229
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
121579229
NCBI-ProteinID:
XP_041749567
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All DBs
Position
13:complement(30068579..30073523)
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AA seq
354 aa
AA seq
DB search
MPVSRMRMRPWLEDKIESNSISGLVWVDKDKKIFSIPWKHAARHGWDLNKDACLFKQWAM
HTGKFIQGETTPDPKTWKANFRCAMNSLPDIKEVKDKSINRGSGAVRVYRMLNVCTKPNN
KRSKAKDAKNNNKGLNIKTEEMDYSETHCPEDRNTNTHLQDDRMTQESTVDSTVDSTYNL
GFTTYVPDVTDFPTSVEIGPDSTNADVPDFSTSVEIGPEGTNEYYPSFQVSPDHSTDYED
SLDMNEETLIEIAKHWEQLEQLEQLEQQDSVNIKGFLSNEVATAESYNTAESNHSPESQW
SDNSGSEIELRLYTELSPGQPMAEDLLSYTDHWALNNTLNNNMTSYLQQISCPL
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgtctaggatgagaatgaggccttggctggaggataagattgagtccaactcc
atcagtggtttggtgtgggtggacaaggacaagaagattttctccatcccatggaagcat
gctgcacgtcacggatgggacctgaacaaggatgcctgtctattcaagcaatgggctatg
cacacagggaaattcatacaaggcgagactacaccagaccctaagacatggaaggctaat
ttccgctgtgcaatgaactcccttcctgacatcaaggaggtgaaagacaagagcatcaac
agagggtctggagcggtgcgcgtttacagaatgctgaacgtctgcacaaagccaaataac
aagaggtcaaaagcaaaggatgcaaagaataacaacaaggggttaaacatcaagacagag
gaaatggactacagtgaaacccattgcccagaggaccgcaacaccaacacacacctgcag
gatgacagaatgacacaggagagcacagtcgacagcacagtcgacagcacatacaaccta
ggttttacgacgtacgtccctgatgttacagactttcccacctctgtggaaataggccca
gacagcaccaatgctgatgttccagacttttccacctctgtggaaataggcccagaaggc
accaacgaatactacccgtctttccaagtgtcaccggatcactccacagactatgaagac
agtctagatatgaatgaagaaacccttattgagattgcaaagcattgggagcaattggaa
caattggagcaattggagcagcaagacagtgtaaacatcaagggtttcctgagcaatgaa
gtagccacagcagagtcatacaacacagcagagtctaaccacagtccagagagccaatgg
agtgataactcagggtcagaaatagagctgcggttatacacagaactgagcccaggacaa
ccaatggctgaagatctcctctcttacaccgaccactgggccctgaacaacacactgaac
aacaacatgaccagttatctccaacagatctcctgcccactctga
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