Coregonus clupeaformis (lake whitefish): 121579230
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Entry
121579230 CDS
T08357
Name
(RefSeq) interferon regulatory factor 1-like isoform X1
KO
K09444
interferon regulatory factor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121579230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121579230
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
121579230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF
Motif
Other DBs
NCBI-GeneID:
121579230
NCBI-ProteinID:
XP_041749569
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All DBs
Position
13:complement(30051761..30056473)
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AA seq
343 aa
AA seq
DB search
MPVSRMRMRPWLEDKIESNSISGLVWVDKDKKIFSIPWKHAALHGWDLNKDACLFKQWAM
HTGKFIQGETTPDPKTWKLNFRNAMNSLLDIKEVKDKSINRGSGAVRVYRMLNVCTKPNN
KRSKAKDAKNNNKGLNIKTEEMDYSETHCPEDRNTNTHLQDRTTQERTVDSTVDSTYNLD
FPTSVEIGPDSTNADVPDFSTSVEIYPEGTNEYYPSFQVSPDHSTDYEDSLDMNEETLIE
IAKHWEQLEQLEQLEQQDSVNIKGFLSNEVATAESYNTAESNHSPESQWSDNSGSEIELQ
LYTELSPGQPMAEDLLSYTDHWALNNTLNNSTTSYLQQISRSL
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgtctaggatgagaatgaggccttggctggaggataagattgagtccaactcc
atcagtggattggtgtgggtggacaaggacaagaagattttctccatcccatggaagcat
gctgcacttcacggatgggacctgaacaaggatgcctgtctattcaagcaatgggccatg
cacacagggaaattcatacaaggcgagactacaccagaccctaagacatggaagcttaat
ttccgcaatgcaatgaactcccttcttgacatcaaggaggtgaaagacaagagcatcaac
agagggtctggagcggtgcgcgtttacagaatgctgaacgtctgcacaaagccaaataac
aagaggtcaaaagcaaaggatgcaaagaataacaacaaggggttaaacatcaagacagag
gaaatggactacagtgaaacccattgcccagaggaccgcaacaccaacacacacctgcag
gatagaacgacacaggagaggacagtcgacagcacagtcgacagcacatacaacctagac
tttcccacctctgtggaaataggcccagacagcaccaatgctgatgttccagacttttcc
acctctgtggaaatatacccagaaggcaccaacgaatactacccgtctttccaagtgtca
ccggatcactccacagactatgaagacagtctagatatgaatgaagaaacccttattgag
attgcaaagcattgggagcaattggaacaattggagcaattggagcagcaagacagtgta
aacatcaagggtttcctgagcaatgaagtagccacagcagagtcatacaacacagcagag
tctaaccacagtccagagagccaatggagtgataactcagggtcagaaatagagctgcag
ttatacacagaactgagcccaggacaaccaatggctgaagatctcctctcttacaccgac
cactgggccttgaacaacacactgaacaacagcacgaccagttatctccaacagatctcc
cgctcactctga
DBGET
integrated database retrieval system
