Coregonus clupeaformis (lake whitefish): 121579242
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Entry
121579242 CDS
T08357
Name
(RefSeq) protein transport protein Sec24A isoform X1
KO
K14007
protein transport protein SEC24
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
121579242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121579242
Membrane trafficking [BR:
cclu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
121579242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec23_trunk
Sec23_BS
Sec23_helical
zf-Sec23_Sec24
Gelsolin
Sen15
Motif
Other DBs
NCBI-GeneID:
121579242
NCBI-ProteinID:
XP_041749586
LinkDB
All DBs
Position
13:31522851..31547668
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AA seq
1229 aa
AA seq
DB search
MSSNTGFNSQNGPGGQPYANGPLQNPAVLQPPGPGYNMSHQPPYNPMQAKGPMPPGTGLY
NSGPYQPIPPVSSYQAPPGQPMLNRPPMGPPQPMTPPQSTSPCPGPRMPPAHATPQSTSP
GPRMPPAHATPQSTSPCPGPRMPPAHATPQSTSPCPGPRMPPAHATPQSTSPCPGPRMPP
AHATPQSTSPCPGPRMPPAHATPPPVSANSYYQHPPAWQYGALPPMGAPPPIGAPPPMAT
PPLAFVGNHVTSSPSPAPPQATSAGYSAAPSPVFNNAMQSPGPSLPPTSLHRYTHEGSDP
PPKNPMAPHTYQPGMAAPYGHPPAGPPPSMRPTPPPMGNATPPLPFGPETDAQCGSDASD
DDAHTECDNQENDIECPAGHIPTPGNGAQVPNRFDHLETGPKMAGPLPPQQPGPPARHMG
LSYPSLPPGYQNTSASPMHHPMHAPTQPYSHAPQSYQQPSAGPSQLSPSLAGLSLQSQTP
EALRVVNLLQERNLLPPGPFTPPTPCLPKDLQKINCHPEVFRSTLTSIPQTQSLLNKAKL
PLGLLLHPFKDLSQLPVVTSSTIVRCRSCRTYINPFVTFLDQRRWKCNLCYRVNDVPEEF
MYNPVSRSYGEPHKRPEVQNATIEFIAPSEYMLRPPQPAVYLFVLDVSHNAVETGYLDVV
CQSLLENINALPGDSRTKIGFITFDSTIHFYNLQEGLAQPQMLIVSDIEDIFLPTPDSLL
VNLNECKELVQDLLKSLPQMFGKTMETQSALGPALQAAFKLLSATGGRVSVFQTQLPNLG
VGALKSREDPNQRASAKDIQNLSPATDFYKKLALDCSGQQVAVDLFLLSTQYCDLASLAC
ISRYSAGSVYYYPSYQQQHNPAGVECFQKDLKRYLTRKIGLEAVMRIRCTKGLSIHTFHG
NFFVRSTDLLSLPNVNPDAGFAVQMSIEENLVDMQSVSFQAALLYTSSKGERRIRVHTMC
LPVVNSLSDIFAGADVQAITGLLASMAVDRSVTASLSDARDAMTNASIDSLTSYRTSVLT
IQQPGLLAPACLRLFPLYILALLKQKAFRTGTSTRLDDRVFAMCQLKYQPLAYVMLMIHP
ALYRVDDLTDEGALNISERAIPQPRVQQLSVEKLSREGAFLMDAGSVIYLWIGRNCNPNF
LTQVLGVPNYAAVPQNMNILPELDTAESQRTRAFVGWLREQRPFFPILHVIRDESPLKAS
FMQNMIEDRTESALSYYEFLLHVQQQVSK
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtaacacgggattcaactctcagaatgggccaggaggacagccatacgcaaat
ggtcccttacagaatccagcagtgctgcagccaccaggaccgggttacaacatgtcccac
cagcctccatacaacccaatgcaagccaagggccccatgccgcctggcactggactctat
aactctgggccctaccagcccatcccaccagtcagctcttaccaggcccctccaggtcag
cccatgttaaacaggcctcctatgggacctccccagcccatgaccccccctcagtccacc
agcccttgcccaggccccaggatgcccccagcgcatgccacccctcagtccaccagccca
ggccccaggatgcccccagcgcatgccacccctcagtccaccagcccttgcccaggcccc
aggatgcccccagcgcatgccaccccccagtccaccagcccttgcccaggccccaggatg
cccccagcgcatgccaccccccagtccaccagcccttgcccaggccccaggatgccccca
gcgcatgccacccctcagtccaccagcccttgcccaggccccaggatgcccccagcgcat
gccacccctccacctgtgtctgctaacagctactaccagcaccccccagcctggcagtat
ggggcccttccaccgatgggagctcctccaccaattggggcgccgcctcctatggccacg
cctcccctcgcgtttgtgggtaatcacgtgacctcctcgcctagcccggcaccaccccag
gccacctcggcggggtacagcgcagcgccttctcctgtcttcaacaacgccatgcaatcc
ccggggccttccctgcctcccacctccctccacagatacacccacgaaggctctgaccct
cctccaaagaaccccatggctcctcacacataccagccaggtatggcagcaccttacggc
cacccacctgcaggacccccaccctctatgagacccactccaccccccatgggcaatgct
acccctccccttccctttggccccgagactgatgctcagtgtgggagtgatgctagtgat
gatgatgcccacactgagtgcgacaaccaggagaatgatattgagtgtccagcaggacac
atacccacacctggtaatggcgctcaagttcccaaccgctttgatcacttggagacaggc
cctaaaatggctggcccactcccgccccagcagccgggcccccctgctcgacacatgggt
ctgtcctacccctctctacccccagggtaccagaacacctccgcctcccccatgcaccat
cccatgcatgccccgacgcagccttacagccatgcgcctcagtcataccagcagccctct
gcaggtccatcccagctgagcccctccctagctgggttgagtctgcagtcccagacccct
gaggccctgagggtggtcaacctgctgcaggagaggaacctgctccccccgggccccttc
acccctcctacgccctgcctgcccaaggacctgcagaaaatcaactgccacccagaggtc
ttccggagtaccctgactagcatcccccagacccagtctctgttaaataaagccaagctt
ccactcggcttgctgctccaccccttcaaagatctctcgcaactgcctgtggtcacctcc
agcactatagtgaggtgtcgttcctgcaggacgtatatcaacccctttgtgaccttcctg
gaccagaggagatggaagtgtaacctgtgctaccgggtcaatgacgttccagaggagttc
atgtacaacccagttagcagatcgtacggagagccacacaaaagacctgaggtccagaac
gccaccatcgagttcatcgcaccctcagaatacatgctgagacccccccagcctgccgtt
tacctcttcgtgctggatgtatcccacaacgccgtggaaactggatacctagatgtcgtc
tgtcagtcactgctggagaacatcaatgcgctccctggagactccaggacaaagattggc
ttcatcacctttgacagcaccatccacttctacaacctccaggagggcctggcccaacca
cagatgctcattgtctctgacattgaagatatatttttaccaacaccagacagcctttta
gtgaacctcaatgaatgcaaggagctggtgcaggatctgctgaagagcctgccccagatg
tttggcaagaccatggagacccagtctgctctgggcccggccctgcaggcagccttcaag
ctgctgtcggccaccggggggcgcgtgtccgtcttccagacacagctgcccaacctgggc
gtgggggccctcaagtccagagaggaccccaaccagagagcttcagccaaggacatccag
aacctgtctcctgccacagacttctataagaagctggccctggactgttcaggacagcag
gtggctgtagacctgttcttactgagcacccagtactgtgacctggcctctttagcttgc
atatccaggtactcagcaggaagtgtgtactattacccctcctaccagcagcagcacaac
ccagccggggttgagtgcttccagaaggatctcaagaggtaccttaccaggaagattggc
ttggaggccgtaatgaggatccgctgcactaaaggtttgtccatccacacgttccatggg
aatttctttgtgcgctccacggatctgctgtccctgcccaacgtgaacccagacgcgggc
ttcgctgtgcagatgtccattgaggagaacctggtggacatgcagtccgtctccttccag
gctgcgctgctctacacgtccagcaaaggagagagaagaattcgagtccacaccatgtgt
ttgcctgttgtcaactccctgtccgacatctttgctggggctgatgtccaggctatcact
ggtctgctggctagcatggctgtggatcgctcggtgacggccagtttgagtgacgcccga
gacgcgatgaccaacgcttccatcgactctctgacgtcctaccgcacctctgtgctcacc
atccagcagcctggcctcctggcccccgcctgcctcaggctgttccctctttacatcctg
gccctgctcaaacagaaagccttcagaacgggaacaagcaccaggctggacgaccgtgtg
tttgctatgtgtcagctgaagtaccagcctctggcatacgtcatgctgatgatccaccca
gcgctgtaccgtgtggacgacctgactgacgagggagccctgaacatcagtgagcgtgcc
atcccccagcccagagtccagcagctgtctgtggagaagctgagcagagagggggccttc
ctcatggatgctggctcggtgatctatctctggatcggaagaaactgcaaccccaacttc
ctcacgcaagtcctcggggtcccaaactacgctgctgtgcctcagaacatgaacattctc
ccagagttggacactgcagagtcccagagaaccagagcgtttgttggctggctgagggaa
cagaggcccttcttccccatcctgcatgtcatcagggatgagagcccactgaaagccagc
tttatgcagaacatgattgaggatcggacagagtcagccttgtcttactatgagttttta
ctccacgtccaacagcaagtctccaagtaa
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integrated database retrieval system
