KEGG   Coregonus clupeaformis (lake whitefish): 121579253
Entry
121579253         CDS       T08357                                 
Symbol
smfn
Name
(RefSeq) small fragment nuclease
  KO
K13288  oligoribonuclease [EC:3.1.-.-]
Organism
cclu  Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008  Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:cclu00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    121579253 (smfn)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cclu03019]
    121579253 (smfn)
   03009 Ribosome biogenesis [BR:cclu03009]
    121579253 (smfn)
Messenger RNA biogenesis [BR:cclu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     121579253 (smfn)
Ribosome biogenesis [BR:cclu03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    121579253 (smfn)
SSDB
Motif
Pfam: RNase_T Rv2179c-like EncFtn-like
Other DBs
NCBI-GeneID: 121579253
NCBI-ProteinID: XP_041749626
LinkDB
Position
13:complement(32656269..32679543)
AA seq 289 aa
MPVLLCTRTSALTFSSKLLCKFANFPTLRPSSSQRFSACRNLFLQSSTSRNCAYISVQRK
GLASRRTGLNISVHNISTYRKKMSSSRSDPGMRQRMVWVDLEMTGLDIEKDQIIEMACII
TDSELNVLAEGPNLIINTTDELLDGMDDWCKEHHGNSGLTQAVRDSKISLQQAEYEFLSF
IRQHTPPGHCPLAGNSVHADKKFLDKYMPQFMRHLHYRIIDVSTIKELCRRWFPEEYKLT
PQKKASHRALDDIQESIKELHFYRAHVFKSQTEEKKHKILQNGDSNKSV
NT seq 870 nt   +upstreamnt  +downstreamnt
atgccggtgttgttgtgcacgcgaacatcagcgttgactttcagctcgaaacttctttgc
aagtttgcgaatttccctactcttcgcccaagcagcagtcaaagattttcagcctgtcga
aatttatttttgcagtcaagcacaagtcggaactgcgcttatatttctgtgcagaggaaa
ggcctagcgtcgagacggaccgggctgaatatttctgtacataatatctccacataccgc
aagaaaatgtcatcttcgcggtcagaccctggcatgaggcagaggatggtgtgggtggac
ttggagatgacaggactggacatcgagaaggaccagatcattgaaatggcgtgcatcata
acagattcagaattaaatgttttagctgagggtcccaatttgataatcaacacaaccgac
gaactgctggacgggatggacgactggtgtaaagaacatcatggcaattctgggttgaca
caggcagtgagggacagtaagatctcgctgcagcaggctgagtacgagtttctctctttc
atcagacagcacaccccaccgggccactgtccccttgcagggaactcagtgcatgctgac
aagaagttcctggacaagtacatgccccagttcatgcgccacctccattacaggatcatc
gacgtgagcacgatcaaggagctctgcagacggtggtttccagaagaatacaagctcaca
ccacagaagaaagcgtctcacagagcacttgatgacattcaggagagcatcaaggaactg
cacttctacagagcacacgttttcaaatcgcaaacagaggaaaagaagcacaagatattg
caaaatggcgacagcaacaaaagtgtgtga

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