Coregonus clupeaformis (lake whitefish): 121579253
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Entry
121579253 CDS
T08357
Symbol
smfn
Name
(RefSeq) small fragment nuclease
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
121579253 (smfn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121579253 (smfn)
03009 Ribosome biogenesis [BR:
cclu03009
]
121579253 (smfn)
Messenger RNA biogenesis [BR:
cclu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
121579253 (smfn)
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
Pre-60S particles
RNases
121579253 (smfn)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
EncFtn-like
Motif
Other DBs
NCBI-GeneID:
121579253
NCBI-ProteinID:
XP_041749626
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Position
13:complement(32656269..32679543)
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AA seq
289 aa
AA seq
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MPVLLCTRTSALTFSSKLLCKFANFPTLRPSSSQRFSACRNLFLQSSTSRNCAYISVQRK
GLASRRTGLNISVHNISTYRKKMSSSRSDPGMRQRMVWVDLEMTGLDIEKDQIIEMACII
TDSELNVLAEGPNLIINTTDELLDGMDDWCKEHHGNSGLTQAVRDSKISLQQAEYEFLSF
IRQHTPPGHCPLAGNSVHADKKFLDKYMPQFMRHLHYRIIDVSTIKELCRRWFPEEYKLT
PQKKASHRALDDIQESIKELHFYRAHVFKSQTEEKKHKILQNGDSNKSV
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgttgttgtgcacgcgaacatcagcgttgactttcagctcgaaacttctttgc
aagtttgcgaatttccctactcttcgcccaagcagcagtcaaagattttcagcctgtcga
aatttatttttgcagtcaagcacaagtcggaactgcgcttatatttctgtgcagaggaaa
ggcctagcgtcgagacggaccgggctgaatatttctgtacataatatctccacataccgc
aagaaaatgtcatcttcgcggtcagaccctggcatgaggcagaggatggtgtgggtggac
ttggagatgacaggactggacatcgagaaggaccagatcattgaaatggcgtgcatcata
acagattcagaattaaatgttttagctgagggtcccaatttgataatcaacacaaccgac
gaactgctggacgggatggacgactggtgtaaagaacatcatggcaattctgggttgaca
caggcagtgagggacagtaagatctcgctgcagcaggctgagtacgagtttctctctttc
atcagacagcacaccccaccgggccactgtccccttgcagggaactcagtgcatgctgac
aagaagttcctggacaagtacatgccccagttcatgcgccacctccattacaggatcatc
gacgtgagcacgatcaaggagctctgcagacggtggtttccagaagaatacaagctcaca
ccacagaagaaagcgtctcacagagcacttgatgacattcaggagagcatcaaggaactg
cacttctacagagcacacgttttcaaatcgcaaacagaggaaaagaagcacaagatattg
caaaatggcgacagcaacaaaagtgtgtga
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