Coregonus clupeaformis (lake whitefish): 121579268
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Entry
121579268 CDS
T08357
Symbol
lig3
Name
(RefSeq) DNA ligase 3 isoform X1
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
121579268 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121579268 (lig3)
Enzymes [BR:
cclu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
121579268 (lig3)
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
121579268 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
RNA_ligase
BRCT_2
mRNA_cap_enzyme
FAD_binding_1
Motif
Other DBs
NCBI-GeneID:
121579268
NCBI-ProteinID:
XP_041749661
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All DBs
Position
13:2691021..2710732
Genome browser
AA seq
1017 aa
AA seq
DB search
MLRFLISLSLKTVYNRHFGKLCRCQPTWKLFGAYPLSANFQILPHCRGILPYPLDFYQCT
QPPRNRSLSIDSNFKVCWRHYCTKQTDMAEQRYCVEYAKRGTAGCKKCKDKIMKGLTRIG
KIVPNPFSESAGEMKEWYHVKCIFEKMERARATTKKIEDITDLEGWEELQDEDKELINKL
VGDLMAKANASPKKKVQAKLNNSGQLSAPPADPPLNAPRKFSGFTATKAGSSSSPGPSPA
KPNQGSPLSAQLCDPKHKDSLLREFRKLCAMVADKNSYNVKTQIIHDFLKKGSGGDKFKG
DVYLTVKLLLPGVVKSVYNLNDKQIVKLFSRIFNCNQEEMVRDLEQGDVSETVRMFFEES
KSFPPAAKSLLTIQEVDASLTRLAQLTKEDDQQKELEDISKKCTGNDLKCIIRLIKHDLK
MNSGAKHVLDAVDPNAYDAFKASRNLGDVIERVLKNQQDVTNGSGPRKLLTIEASLMTPV
QPMLAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHF
KEFIPQAFVGGNSMILDAEVLLIDTNTSKPLPFGTLGVHKKAAFEDAKVCLFVFDCIYFN
GLSLMEKPLYERRKFLHDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKD
LKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPHSK
KWCTVTKCSGGYDDAMLTRLQKELDVIKISKEPSKIPGWLKIIKNYYPDFIIRDPEKAPV
WEITGAEFSKSEMHTADGISIRFPRMTRVRDDKDWKSATNLTQLKELFRISKERCDFEVT
AGPSKGGEDDKGSSGGDSGSNSPPSTSHRPVTPRKTSNSNTPKAKVVKLEPPSPVPATKR
KMPSEEPSAKKVKTETVHHSNGQSKTKTTPSKLVEPRNDKTLLDIFSGVKLVLPDSVPDH
TKLRRYFVAYDGDLVPEYDAASATHTLTEPEEDSHAQRVTPGWIWECIRKRRVVPPC
NT seq
3054 nt
NT seq
+upstream
nt +downstream
nt
atgctgagattcttaatttcattgtcacttaagactgtctacaatagacattttgggaaa
ctgtgcaggtgtcaacccacctggaaactgtttggcgcttatcccttatctgcaaacttc
caaattctaccccattgtaggggcatcctcccctatcccttggacttctatcagtgcacc
cagccccctcggaatcgcagtctttcaatagattctaatttcaaggtttgctggcgtcac
tattgtactaaacagacagacatggctgaacagagatactgtgtggagtatgccaaacgt
ggcactgcgggatgtaagaagtgtaaggacaaaatcatgaagggcttgacccgcatcggg
aagattgtgcctaacccgttcagtgagtccgctggggagatgaaggagtggtaccatgtg
aagtgtatctttgagaagatggagcgggcccgggccaccactaagaagatcgaggacatc
acagacctggagggctgggaggagctgcaggatgaggacaaggagctcatcaacaaactt
gttggagacttgatggccaaagctaacgcgagcccaaagaagaaggtgcaagccaagctg
aacaacagtggtcagctatcagctccgcctgctgaccctcctctgaatgcaccacggaag
ttctctggcttcacagctactaaggctgggagctcaagcagcccaggcccatccccagcc
aaacccaaccagggcagtcctctgtccgcccagctctgtgaccccaaacacaaggatagc
ctgctccgggagttccgcaagctgtgtgccatggtggcagacaagaatagctacaacgtc
aagacgcagatcatccacgacttcctgaagaaaggctctgggggagataaattcaaggga
gatgtgtacctgacggtgaagctgcttctcccaggggtggtgaagagtgtgtacaacctc
aacgacaaacagatagtcaagctcttcagccgcatcttcaactgcaaccaggaggagatg
gtgcgagatctggaacagggggatgtgtcggagacagtgaggatgttttttgaagaaagc
aagtctttcccgccggccgctaagagtctgctcacgattcaggaagtggatgcgtccctt
acccgtctggcccagttaaccaaggaggatgaccagcagaaagagctagaggacatatcc
aaaaaatgcactggcaatgacctgaaatgtatcatcagactcatcaagcatgatctgaag
atgaactctggagctaagcatgtcttggatgcagtggacccgaatgcctacgatgctttc
aaggcctcccgtaacctaggggacgtgatagagcgtgtgctgaagaaccagcaggacgtc
accaacggctcaggccccaggaagctcctcactattgaagcctccctcatgaccccagtg
cagcctatgctggccgaggcatgcaagtccattgagtacgccatgaagaagtgtcccaac
ggcatgtactctgaaatcaagtacgacggtgagcgtgtgcaggtccacaagaatggagac
cacttcagctacttcagccgcagcctcaaacctgtgttgccgcacaaggtggcccatttt
aaagagttcatccctcaggccttcgtcggtggcaacagcatgatcctggatgccgaggtg
ctcctcatcgacaccaacaccagcaagccactgcccttcgggacgctgggggtgcacaag
aaagcagccttcgaagacgccaaagtgtgcttgtttgtgttcgactgcatctatttcaac
ggcttgagcctgatggagaagcccctgtacgaacgaaggaagttcctccatgacaacatg
gtggaggtccccaacaggatcctgttctccgagatgaagcacgtcactagggcggctgac
ttggccgagatgatcacacgggtcatcagagagggactggaggggctggtcctcaaagac
ctcaagggcacctatgagccagggaagcgccactggctgaaggtaaagaaggactacctg
aacgagggagcaatggccgacaccgcagacctggtggtgctgggagccttctatggcaaa
ggctcaaacggcgggataatgtccagtttcttaatgggctgctatgaccctcactctaag
aagtggtgcaccgtgaccaagtgctccggaggctacgatgacgccatgttgacccgactc
cagaaggagctggacgtgatcaaaatcagcaaggaacccagcaaaatccctggctggttg
aaaatcatcaagaactattaccctgattttattatccgtgatcccgagaaagcgccggtg
tgggagatcacgggggcggagttctccaagtcggagatgcacacagccgacggcatatcc
atccgcttcccccgcatgacgcgtgtccgtgacgacaaggactggaagagcgccaccaac
ctgacgcagctcaaagagctcttccgcatctccaaggagaggtgtgactttgaggtgaca
gcagggccctccaaaggaggtgaggatgacaagggctcttcaggaggagacagcgggagc
aactctccaccctccacctcccacagaccagtcacacccagaaagaccagcaacagcaat
acccccaaagccaaggtagtgaagctggagcctccctcccctgttccagcaaccaagagg
aaaatgccctcagaagagcccagcgcaaagaaggtaaagactgaaactgtccatcacagt
aatggacaaagcaagacaaagacgacgccctccaagttggtagaacccaggaatgacaag
actttactggacattttcagtggggtgaagctggtcctgccagactctgtgccggaccac
accaagctgcggcgctactttgtggcctacgacggggacctagtgccggagtatgatgcc
gcctcggccacacacaccctgacagagcccgaggaggacagccacgcccagagagtcacc
cccggctggatctgggagtgtatccgcaagagacgggtggtgcccccctgctga
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