Coregonus clupeaformis (lake whitefish): 121579281
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Entry
121579281 CDS
T08357
Symbol
arhgef12b
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04270
Vascular smooth muscle contraction
cclu04625
C-type lectin receptor signaling pathway
cclu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
121579281 (arhgef12b)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
121579281 (arhgef12b)
09153 Circulatory system
04270 Vascular smooth muscle contraction
121579281 (arhgef12b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121579281 (arhgef12b)
Membrane trafficking [BR:
cclu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
121579281 (arhgef12b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
NPP-6_helical
Motif
Other DBs
NCBI-GeneID:
121579281
NCBI-ProteinID:
XP_045080062
LinkDB
All DBs
Position
13:complement(3289484..3418504)
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AA seq
1523 aa
AA seq
DB search
MSGTQSTLPDRFSKKATRTPSILSKDHPPDKKPKSDKNTVPPAHEFDPTDVPVQRSGCVV
AEGIPPEPCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKV
NGTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLAQISLSEGEGGDLSSFLSSSQSPGPT
GGTGERCATSSTSPQDHITSPLPLWKENNALHSQKVDILQKMLTKEQEDLQAMKEVYSKN
PTAKLLKDIQEAKKHIPLLQSQLSKATGTPQDGSLSPRDSEVEEGGFGAADGEQTPSSRG
ESGSDGPWTNNTVSPSPLPESPCQRETPCHSPKTTPRESLNSCPSPDVEDTPDLDCNFQS
SVGSPLSRLNPQIIGAEDDYFDTEQEQINGQCSCFQSIELLKSRPAHLAAFLHHVVSQFD
PAPLLCYLYADLYKQTNSKETRRIFMDFHTFFMDRAANLKVAVPESMASELERRRPELIP
EELHRPYTQLLQDTLLPDIQRNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVSLERERS
CAEHIISKIEDVLLTSQPTEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVRINFLPK
IKKSIKTEKEGEEKVKKPRFPSILGPPRRPSRVDSASISKAMEMNKQRGPQKQLSQPALS
VSEHPEFSAGGIRARSQFSDPGSDAVAHPLAFMASPPYSAPASQGSDPTGRDSDSGLSPS
SALLRLSSDGLHSGDTQDGMVHLTGTHFDFSPCTLDQLQEEERESDRAQEGGTPKPARRM
DGLGCGDVPSEDDQGNEIECEQDPPNWQALVSREVLAGLTPQEIKRQEVINELFYTERAH
LRMLKVLDNVFYQKLSRDGILPPGDIKHIFSNLEEIVQLHVWITEQMTVIRKKNETSVID
LIGDDLLAWFSDDEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRLCR
RLQLKDIIPVEMQRLTKYPLLLESIAKYTEDTEERDKVKRAGECCREILNYVNQTVKEAE
NKQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTKRKMVHEGPLSWKVNKDKTIELYTLL
LEDILVLLQKQDERLVLKCHSKNLAGTADTKHIFSPIIKLNTVLVRSVATDNKSFFVLSM
SDNGAQIYELMAQTVSEQRMWQCLITQSAETMKTETHNIIPLPQTDAERDAVEIISTGVP
KLSKDPERTSMGCTESPEKDVTSSPGLQPMPTSTNPFDGVKSDDEEEEDSPLPDRREEQE
EEEEVEEVDEEEIEAFLDGELADRLPFLQERSRQGIAIDDQEPDDTFGMPPSRAEEALRT
LAALRQVLLNHMTSRAEGSNKDKEKGKEKEKEQRKGRAPGGRLLRTTSLRGPEDNNSSTS
APRSAAAPSTGSSENGASERTEAGREEGTPGSMELRSGDTGFFETSEDYGSYMVLEGYGA
SGESSTDGGGGAQWGPDIDLKKLLSSSSQTGGAGPNLSRQIMTHLRLLQANLQHLKEVET
KYNELRQRLTETTADTEENKDKS
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgagcggcacacagtcaacactccctgacaggttttccaaaaaagcaaccaggacccct
agcattctcagcaaggaccaccccccagacaagaaacccaagagtgacaaaaacacagtc
ccaccggcgcatgagtttgaccctacagacgtgcctgtgcagcgatctggctgtgtagta
gccgagggaatcccccccgaaccctgtgggcttgtccagcgttgtgtgatcatccagaaa
gatgagaatggtttcgggttgacggtgagcggagacaaccctgtatttgtgcagttggtc
aaagaggatggcgctgccatgcgagcgggcgtccagacaggtgataggatcatcaaggtt
aacgggaccttagtaacacattcaaaccatgtagaagttgtcaagctaataaaatcgggc
tcctatgtggccctcacagtgctggggaggcccccggggctggcccagatctcgctgtcg
gagggcgaggggggagacctgtcctctttcctctcctcgtcccagtctcctggaccaacg
gggggaacaggggagcgctgcgccacctcctccaccagcccccaggaccacatcacctcc
cctctgcccctctggaaggagaataacgcccttcacagccagaaggtggacatcttacag
aagatgctgaccaaggagcaggaggacttacaggctatgaaggaggtgtacagcaagaac
cccacagcgaaactactgaaggacatccaggaggccaagaaacacattcctctgctgcag
agccagctcagcaaggccacaggcacacctcaggatggctccctctccccccgggacagt
gaggtggaggaggggggctttggggcagccgatggagagcagaccccctcctcgcgggga
gagagcggcagcgacgggccctggaccaataacactgtgtctcccagtcccctccctgaa
agtccatgccaaagagagaccccctgccacagcccaaagaccaccccccgagagagcctc
aactcctgcccctcgcctgacgtagaggacacgccggacctggactgtaacttccagtcc
agtgtgggcagccccttgtcccgtctcaacccccagataattggagcagaggatgactac
tttgacacggagcaggaacagatcaacggtcagtgtagttgttttcagagtatagagctg
ctcaagtctcggcccgctcacttggccgccttcctccatcacgtggtctctcagtttgac
cctgcacctctgctgtgctacctctatgctgacctgtacaagcagaccaactccaaagag
accagacggatcttcatggatttccatactttctttatggaccgagcagcgaatctgaaa
gtagctgtgcctgagtcgatggcctctgaactagagcggcggagacctgagctgatccca
gaggaactgcacagaccttacacacagctgctacaggacacactactaccagacatccag
aggaacctagaggacttcaggcagaagcgcagtatgggtctgaccctggcagaaggggag
ctggctaagctggacacagagagggtgagagaccgtgtgtcgctggagagagaacgctcc
tgtgccgaacacatcatctccaagatagaggacgttctgctgacgtcacagcccacagaa
gaggagaagtgcactactatgcagtatgtcatcctcacctatatgaaacacctgggagtg
aaagtaaaggaaccacgtagcctagagcccaaacgagtccgcatcaacttcctgcccaag
atcaagaagagcatcaaaactgagaaagagggggaggagaaggtgaagaagcctcgcttt
cccagcatcctcggccctcctcggcggcccagccgcgtggactcagcttcaatcagtaag
gccatggagatgaacaagcagcggggaccccagaagcagctctcccagcccgccctcagc
gtctccgagcacccagaattctcagcgggcggcatccgcgcccgcagccaattcagcgat
ccaggctctgacgcggtcgcccaccccttggccttcatggcctcccccccctacagtgcc
ccagccagccagggctccgacccaacgggacgcgactccgactcgggactcagtccctcc
tctgccctgctcagactgagctccgacgggctccactcgggcgacacccaggacgggatg
gtccacctaaccggcacccactttgacttcagcccctgcactctggaccaattacaggag
gaggagcgtgaaagtgacagggcccaagagggaggcacgcccaaaccagcccggaggatg
gacgggttaggctgtggagatgtgccgagtgaggacgaccaggggaacgagatcgagtgc
gagcaggaccctcccaactggcaggcactggtcagccgagaggtcctggcgggcctgacg
ccacaggagatcaaaagacaggaagtcatcaacgagctcttctacacagagcgagcccac
ctgaggatgttgaaggtgctggataatgtgttctaccagaaactaagccgagacggcatc
ctgcctcctggagacattaaacacatcttcagtaacctagaggagattgtccagctacac
gtgtggataacggaacagatgactgtcattcggaagaagaacgagacgtcagtgatagac
ctgataggagacgatctactagcttggttcagcgatgacgaggaggagaagatcaagcgg
gcggtgggcaccttctgcagcaaccagcccttcgccctggaactcatcaagacccggcag
aagaaagaccagcgcttcacctcctttatgcaggaggctgagagcaaccgtctctgtcgc
agactgcagctgaaggatataattccagtggagatgcagaggctgaccaagtatccacta
ctgctggagagcattgccaagtacacagaggatacagaggagagggacaaggtaaagagg
gccggggagtgctgcagggagatccttaactatgtcaaccagacagtgaaagaggcagag
aacaaacagaggttagaggactaccagagacgcctggacctctcctcactcaaacagagt
gagaacccaatgatctcagagttcaagagcctggacctgaccaagaggaagatggtgcac
gagggacctctctcctggaaggtcaacaaagacaagaccatcgagctgtacacgttgctc
ctggaggatatcctggtgctgctgcagaagcaggatgagcggttggtcctcaagtgccac
agcaagaacttggcgggcaccgctgacaccaagcacatcttcagccccatcatcaagctc
aacaccgtgctggtgcgctcggtggccaccgacaacaagtccttctttgtgctgtctatg
tccgacaacggagcccagatctacgagctgatggcccagaccgtgtccgagcaaagaatg
tggcagtgtctgataacgcagagcgcagaaaccatgaagacggaaacgcacaacatcata
cctttaccacagaccgatgcggagcgagacgcagtggagattatcagcacgggggtgccc
aaactgagcaaagaccctgagcgcacctccatgggatgtaccgagtccccagaaaaagac
gtcacttcctcgccgggtctgcaacccatgcccacatcgaccaacccatttgacggcgtc
aaatcagacgacgaggaagaagaggactcgccactgccagacagaagagaagaacaagaa
gaggaggaggaagtggaggaggtagacgaggaggaaattgaagcgtttctggatggagag
ctagcagacagactgcccttcctccaggagaggtcacgccagggcattgccatcgacgac
caggagcccgatgacaccttcggcatgcccccctccagagccgaggaggccctaagaacc
ttggcagccctgaggcaggtccttctcaaccacatgacgagcagagcggagggcagcaat
aaggacaaagagaaggggaaggagaaagagaaggagcagaggaagggccgggcccctggg
ggccgcctgctgaggaccacgtccctgaggggccccgaggacaataacagcagtacctcg
gccccaaggagcgcagcagcaccctctactggctcctctgaaaacggcgcctcggagaga
accgaggcagggagggaggaggggaccccggggtccatggaactccggtctggggacaca
ggtttctttgagacttccgaggactatggcagttacatggtcctggagggctacggggcc
tcgggggagagcagcacggatggtgggggcggggcccaatggggcccggacatcgacctg
aagaagctgctctcctcatcctcgcagacaggtggtgccggccccaacctcagccgccag
atcatgacccacctccgcctgctccaggccaacctgcagcatctaaaggaagtggagacc
aagtataatgaactgcgccaaaggctgactgaaacaactgctgacacagaggagaacaaa
gataagagttag
DBGET
integrated database retrieval system
