Coregonus clupeaformis (lake whitefish): 121579295
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Entry
121579295 CDS
T08357
Name
(RefSeq) HMG box transcription factor BBX isoform X1
KO
K21643
HMG box transcription factor BBX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121579295
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121579295
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Gene cluster
GFIT
Motif
Pfam:
DUF2028
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
121579295
NCBI-ProteinID:
XP_041749700
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Position
13:34404940..34456055
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AA seq
878 aa
AA seq
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MKGGGRGKEPVLEVSCKRPKRKCLQWHPLLSKKALDFSEEEEEEEEEELEKEPLLVRETQ
GPKVPCGGPMEGEEDSSEQRARRPMNAFLLFCKRHRSLVRQQHPRLDNRGATKILADWWA
VLEPKEKQKYTDMAKEYKDAFMKANPGYKWCPATNKPVKSPCHTVSNTRNKVWSLPSNSP
KGCATAKKVPKTDSIPQLNFAMADPTKMGGLSMLLLAGEHALTARESPSSSSQSGVTDVT
KYPDKSSLFQLAEISSSTLQPSLTDTAGKGKPLSRGDQSETWSGTSHQGKPDVPNANVKS
PLFQLAEQISSDSSQSTAPEGKQCGQSTLFQLAEMCLASEAGKMEAQDDTCTPHIKTETV
VKEEAGCDTSDLPLSSLPSSSSMPTDASLLLLSGQAASIKKKKKKKDASTREPAKVVDKD
KSPGPGSPTNTLKKRPSSESELESLFYTIEAVAKGAWGDAEEDMPKKKARTAAVTILVES
SSPKKRAKPKAKRPLKAKEDEGKVEKDKDDDGRTELPLTVETAVNTASPKTEAKEASISS
STEEPTSPPSPPHNTEGCGSRKSERSCKGALYKTLVSEGMLTSLRANVDRGKRGSFRSAS
DEGGWTDETWAFSQMGPSNFKKLKKSKSKDETATGLGKLEEEFEKKFNSLPQYSPLTFDK
KSTVVSKKKKTDVSTAPEEQPPKPAKGPSPSQKKTLFHKIVSKYKQKKEKPNTLDKDIAM
RSDSPMFDSAAKATKAKPSPAPCATTRLNPESMGTSPSVPVGSQKRKARKSKITHLVRSA
DGRVSPAEEDKARDLTPEQDDKPLSQDTLCNETGCYSASKQEEADRSSAPEDLPAFFSLA
ALAEVAAMENIHRGQLVIGDSQKKDMAKTPVLISCADQ
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgaaaggtggaggaaggggtaaggagcctgtgctggaggtgagctgcaagcggcccaag
cgcaagtgtctacaatggcacccgctactctccaagaaggccctggacttctcagaggag
gaagaggaggaggaggaagaagaactagagaaggaaccattgctggtcagggagacccag
gggccgaaggtgccatgcggggggcccatggagggggaggaggactcttcagagcagcgg
gcccgccggcccatgaatgccttcctgcttttctgcaagcgccaccgttcgctggtgagg
cagcaacaccctcggctggacaaccgcggtgccaccaagatcctggctgactggtgggcc
gtgctggagcccaaagagaaacagaagtatacagacatggccaaggagtacaaggatgcc
ttcatgaaggctaacccgggctacaagtggtgccccgccaccaacaagccagtcaagagc
ccctgccacactgtcagcaacacccgcaataaagtgtggtccttgccttccaactctcct
aagggctgtgccactgccaagaaagtgcccaagactgacagtataccacagcttaatttc
gccatggcagatcccacgaagatgggtggcctaagcatgctactgttggctggggagcat
gcccttactgccagagagagtccctccagctcctcacagtctggagtcacagatgtcact
aagtaccctgataaatcctccctattccaacttgctgagatctcctccagcacgcttcag
cccagtttaacggacacagctggcaaggggaagcccttgagtcggggagaccagtcagaa
acctggtctggaacctcacatcagggaaagcctgatgtacccaatgccaacgtcaagtca
cctctttttcaactggcagagcagatctcctctgattcgagccagtcgactgcaccagag
ggaaagcagtgtggccagtccactctcttccagcttgccgagatgtgcttggcctccgag
gcagggaagatggaggcacaggatgatacctgcaccccacacatcaaaactgagacggtg
gtcaaggaggaggctgggtgcgacacctccgatcttcctctctcctctctcccgtcttcc
tcctccatgcccactgacgccagtctcctgctgctcagcggccaagcggccagcatcaaa
aagaagaagaagaagaaagacgccagcaccagagagccggccaaagtggtggacaaagac
aagagccctggtcccggctcgcccacaaataccctcaagaagcgaccgtcatccgagtcg
gagttggagagcctcttctacactatcgaagccgtggctaaaggggcctggggcgacgca
gaggaggatatgcccaagaagaaggctcgcaccgccgccgttaccattctggtcgagtcc
agctcacccaaaaagagggccaagcccaaagccaagaggcccctgaaggctaaagaagat
gagggaaaggtggagaaggacaaagatgacgacggacgcacagagcttccattgacagtg
gagactgcggtgaatacagcaagccccaagacggaggctaaggaggccagtattagcagc
agcacggaggagcccacctcccctcccagccccccgcacaacacagaggggtgtggctcc
agaaagtctgagagaagctgcaagggggcgctgtacaagaccctggtgtcggaagggatg
ctgacctcactgagggccaacgtggacagaggcaaaagaggctcttttcgaagtgcatct
gatgaagggggctggactgacgagacctgggctttctcacagatgggacccagtaatttc
aagaagctaaagaagtccaaatccaaagacgagaccgcgacaggtttggggaaactagag
gaggagtttgagaagaagttcaacagcctgccgcagtacagccctctgacattcgacaaa
aagagcaccgtcgtcagcaagaagaaaaaaacagacgttagcaccgcaccggaggaacaa
cctccgaaacctgccaagggtccatctccatctcagaaaaagactttattccacaagatt
gttagcaagtacaagcagaaaaaggagaagcccaatactttggacaaagacatagcgatg
cgtagtgactcccccatgttcgactcggctgccaaggccaccaaggcaaagccgagccca
gccccctgtgccaccaccaggctgaacccagaatccatgggaactagccctagcgtgcca
gtgggcagccagaaaaggaaggccaggaagagcaagatcacccacctggtgcgctcggcc
gacggcagggtgtccccagccgaggaggacaaagccagggacctgaccccggagcaggat
gacaagccattatcccaagatactttatgcaatgaaacagggtgttatagcgcatccaag
caagaggaggcagacaggagcagtgcacccgaagacctgcctgccttctttagcctggct
gcccttgcagaggtggcagccatggagaacattcacagaggccagcttgtgattggtgac
agccagaagaaggacatggccaagacccctgtgctcatctcctgcgctgaccaatga
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