Coregonus clupeaformis (lake whitefish): 121579337
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Entry
121579337 CDS
T08357
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10 isoform X1
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cclu03009
]
121579337
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
121579337
Ribosome biogenesis [BR:
cclu03009
]
Eukaryotic type
90S particles
Helicases
121579337
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
PAS_11
Motif
Other DBs
NCBI-GeneID:
121579337
NCBI-ProteinID:
XP_041749789
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Position
13:15998499..16113641
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AA seq
856 aa
AA seq
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MEKGRRPNLSPKKKMGKKNPTDTADPVKNFERWKKKYNKTKTRVKQEKRQKRKPEWQVEK
EVIQRLVNKYNEINAKDAERFSDFPISKNTLRGLMEAQYRQPTEIQRQTIGFALQGKDVL
GAAKTGSGKTLAFLIPVLECLYRQQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEF
SAGLIIGGKDLKNESEKIHRTNIIICTPGRLLQHMDETAAFHASDLHMLVLDEADRILDM
GFSDTINAIVENLPKTRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLEQ
NYVVCELHQKVNMLFSFIRSHLQKKVIVFFACCKEVQYLFRVFCRLRPGMPILALHGKQQ
QMKRVEVYNDFIKKKNAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYK
EGGEALLVLLPSEEESMLSQLQEKKVPINRIQVNPEKLASVQQKLEAFLAQEKEQKERAQ
RCFVSYLRSVYLMKNKEVFDVFQLKLQEYAASLGLAVAPRVRFLNKAQKQRADPWQSSGQ
GEVAQSEEEENELKSFKDKLRGDGPSAEARDSQSSDEEEKVGEEKLQPGPKGLIFGADEE
EEDEDLRDLDLLTVKRKDVFSLEEGDQDDEESDSNTMKKMEKETKFKEAKKVLKRNFQVN
TKLVFTEEGQMVQQWPPLQRTAVQATEGEEDDGTSGINVEEARERLRREDQEFDKLEYRR
KVKEKHREKRLKEKAARREASKQHTEEQKSGEEDENDEEEVVAYLDGADGEEFDPSTLPD
PDKLCSDSEEEDDQSSPTAGMRKRSHSDCSDDSGEEEEAAGTRKRPRQQAAAKPLDTGLS
LAEDEELVLHLLGNRR
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atggagaagggcagacgaccaaacctgtcccccaagaaaaagatggggaagaaaaaccca
accgacaccgctgatcctgtgaagaacttcgagcgatggaagaagaaatacaataagaca
aaaacacgagtcaaacaggagaaaagacagaaaaggaaacctgaatggcaggtggagaaa
gaagttattcaacgtcttgtcaacaaatataacgagataaatgccaaggatgctgagagg
ttttcagatttccccatctccaagaataccctgcgaggtctgatggaagcacagtatcgt
cagcccacagaaatacagagacagaccattggctttgcattgcaaggtaaagatgttctg
ggcgctgcaaagactggctctgggaaaacactggcctttctcattcctgtattggaatgt
ttgtatcgtcagcagtggacagcaatggatggcctcggggccctcatcatctcccccaca
cgagagctggcctatcagaccttcgaggtgctccgtaaagtgggcaagaaccatgagttc
tctgccggcctcatcattggcggaaaggacctgaaaaatgagtctgagaagatccaccgc
actaacatcatcatctgcacgccaggacgcctgctccagcacatggacgagactgctgcc
tttcacgcctccgatctgcacatgctagttttggatgaggcggatcgtatcttggacatg
ggtttttccgacactatcaacgccatagtggagaacctccccaagacccgtcagacactg
ctgttctcagccacacagaccaagtcagtgaaagacctggcccgcctcagcctcaaagac
ccagagtacgtctgggtgcacgagaaggccaagttcagcacgccggccacactggagcag
aactacgtggtgtgtgagctgcaccagaaggtcaacatgctcttctccttcatcaggagt
cacctgcagaagaaagtaatagtcttctttgcctgctgcaaagaggtgcaatacctgttc
cgggtcttctgtcggctgcgtccgggcatgcccatcctggccctgcatgggaagcaacag
cagatgaagagggtggaggtctacaacgacttcatcaagaagaagaatgctgtgctcttc
gccacagacattgcagccagaggcctagacttccctgctgtgaactgggtgttgcagttt
gactgtccagaggacgccaacacatacatccacagagtgggacgaaccgccaggtataag
gagggaggagaggctctgctcgtcctgctgccctccgaggaggagagcatgctgtcccag
ctccaggagaaaaaagtccccatcaacagaatccaggtgaacccagagaagctggcgagc
gtgcagcagaagctggaggccttcctggcccaagagaaggaacagaaggagcgagcgcag
aggtgttttgtctcctacctgcgctccgtctacctcatgaagaacaaagaagtctttgat
gtgttccagctcaagctccaggagtacgcagcttctctgggccttgctgttgctccaagg
gtgcgtttcctcaacaaagcccagaagcagagagcagacccttggcagagcagcgggcag
ggagaggtggcccagtctgaggaggaggagaatgaactgaagagcttcaaggataagctc
agaggagatgggccaagtgctgaagctcgggattcccaaagctcagatgaggaggagaag
gtgggcgaggaaaagttacagcctgggcctaagggtctcatctttggtgcagatgaagag
gaggaggatgaagatctgagggacttggacctactgacagtgaagagaaaagatgtcttc
agtctggaggagggagaccaggatgatgaggaaagtgacagcaacaccatgaagaagatg
gaaaaagagacaaagttcaaagaggccaagaaagtcctgaagagaaacttccaagtcaat
accaaattagtcttcacagaagagggacagatggtgcagcagtggcccccgctccagagg
actgctgtgcaagccacagagggggaggaggatgatggcacatctggcatcaatgtggag
gaagccagagagaggctgcgtcgagaggaccaggagtttgacaagctggagtacagacgt
aaagtcaaagagaaacacagggagaagagactgaaggagaaggctgccagacgagaagcc
agcaagcagcacactgaggagcagaagtcaggtgaggaggatgagaatgatgaagaggag
gtggtagcgtacctggacggtgccgatggagaggagtttgaccccagcacgctgcccgac
ccggacaaactatgctccgactcagaggaagaagatgaccagagcagccctactgctggg
atgaggaagcgcagccacagtgactgcagcgatgactctggtgaggaagaagaggcagcg
ggaacccggaagagacccaggcaacaggcagctgccaagcccctggacactggcctctct
ctggctgaggacgaagagctggtcctgcatctgctggggaaccggcgctag
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