Coregonus clupeaformis (lake whitefish): 121579402
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Entry
121579402 CDS
T08357
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X4
KO
K20775
BRCA1-A complex subunit RAP80
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
121579402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121579402
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
121579402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
Motif
Other DBs
NCBI-GeneID:
121579402
NCBI-ProteinID:
XP_041749911
LinkDB
All DBs
Position
13:19070789..19080695
Genome browser
AA seq
1034 aa
AA seq
DB search
MPPRKKRENRDTDDGPRKRRRADDQEEGRVVISDSDEDEDFRPTSSSSREERRQEKESKT
RSNEMTEEKMLDLAMRLSKQEASSAALRQQQEEEAMRKAIAESLYADSPTHPHSESLLGA
GSPTQQCQNYPPEGESSIRKLSYPNHGVADRQGARGGGVSVGMAPSDRRGKKEGSPLRDM
PDLSQTQKVYSQSSPLSQASTSVPLPSSQEEGSSQRNLFGDRTAKAIESQDYNNSTKSDS
QSQLRIKSPVFPSTTALQASKPVLCLEKLSQNLLVDCQASGFLLKGHPSLTLTTKSQKSQ
SYQPKSPTFSNTPVFSRTERGAGEEPGQGSPSFPKHGMFSNSDSGEEEKEASPTVPKSLL
IFKTDRGKAEKQGSPTSPKSTMFSKTETFTGSPVFPRTDQIRDQGPQSAVEHVSTTGDYE
DGDIEDPPECSSHRVPAVKSRDGSVCLLPRPRTTLSLNKRFVPIRKTAGVSDKVVDQKER
EGESSQRTVNRISTPAKLVAEEDLHSEELTLALETQPMQELTSNMALRWSDDDEEENGPA
KSAHSPSPVFPQENDLAQPSNQGLSPNTHHCSPPHRHSPCLVPKKRIHTAEDAACEEVES
QSKCIRKKFTFKGMYGAPPPCLPRQVAGRGSQDKAKAGSPSSHQAQCSSSRLSPPTDGQG
DGGVVRYYWGVPFCPRGQNPDAYTQVILSQLEVYEKSLKEAQRGLLRKAGWGEPVLPGPP
ERPFSRRGRPERHRASRLLEEEERGEKRQEELVEVVEDDEEEGEKRERRRSRRGAEGRGR
RGRQEWKDCQALFVSSPEQEEKSPSPVFHADSSQLIQLRRRLSLRREEKRLAETQLPDLP
EEREEDEKEEKRDDEEDGEKREEEEEEVDVGGLEVQETQLSDDSTQDLMVTSPEQPQPES
QSLPRIQTFLSSPRTLEQREEGMLVVGEEEEGRRSGPVVIPAVGEDVRMEEEGDIPEPAF
PQSPSPSMDCPMCMHPFCLTEIEMHAAYCDGTTDIMEEEMAESHLQVSVKARRKRTRRGE
IIGEEQPSSSGAGK
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgcctcctcggaaaaagcgagagaacagagacaccgatgatggtcccaggaaacgacga
cgagcagatgatcaggaagagggcagagttgtcatctcagacagcgacgaggatgaagac
ttcagaccaacatcatcatcatcaagagaggagcgcagacaggagaaggagagtaaaaca
cgatcaaacgagatgacggaggagaagatgctggacctggccatgaggctaagtaaacag
gaggccagtagcgctgctctcaggcaacaacaggaggaggaggccatgaggaaggccatt
gctgaaagcctctacgcagacagccctactcatccccactcagaatctctgctcggggca
gggagccctacccaacaatgtcaaaattaccctccagagggagagagcagcatacgtaag
ctctcctacccaaaccatggtgtggctgacagacagggagcccgcggaggaggtgttagt
gtagggatggctccctcagacaggagggggaagaaggagggaagcccattacgagatatg
cctgacctgtctcagacccagaaggtctactcccagtcctcccccctcagccaagcttcc
acctctgtgcctctcccttcctcacaggaggaggggtcttctcagaggaaccttttcgga
gaccgcacagccaaagcaatagaatctcaggactacaacaactccacaaagagtgactcc
cagtcccaactcaggatcaagtcccctgtgttcccttccactacggccctccaagccagc
aaacctgtcctgtgcctggagaagcttagccagaacctccttgtagactgtcaggcctct
gggttcttactaaagggtcatcccagcttaacgcttaccacaaagtcccagaaatctcag
tcttatcagcccaagagccccacattctccaatacccctgtgttctccagaacagagaga
ggtgcaggtgaggaaccaggccaagggagtccctcctttcctaaacacggcatgttctct
aatagtgattcaggagaggaagaaaaagaggccagtcccaccgttccaaaaagcctgctc
attttcaagactgatagaggaaaggcagagaaacaagggagtccaacttctcctaaaagc
accatgttctctaagactgagaccttcactggaagtccagtctttcccagaactgatcag
ataagggaccagggtccacagagcgctgttgaacatgtctctacaacaggagactatgag
gatggagatatagaggatcctccagagtgttcaagtcatagggtccctgctgtgaagagc
agggatggctcagtgtgcctgctaccacgccccagaacaaccctgtccctaaacaagaga
tttgtgcctataaggaagacagctggagtttcagacaaagttgttgaccaaaaggaacgt
gagggtgaatcctcgcagagaactgtaaacaggattagcacgcctgcaaagttggttgca
gaagaagaccttcattcagaagaacttacgttggctttggagactcagccaatgcaggag
ttaaccagtaatatggcgctacgctggtcagatgatgacgaagaggaaaatggtcctgca
aagtcagctcactcgcccagcccagtcttcccacaggagaatgacctcgctcagccaagc
aaccagggtctctccccaaacacccaccattgttcccccccacacaggcacagcccctgc
ctcgtccccaagaaacgcattcacaccgccgaagatgctgcgtgcgaggaggtggagagc
cagtccaagtgcatccggaagaagttcaccttcaagggcatgtatggagccccccctccc
tgtctccccagacaggttgcaggtagagggagccaggataaggccaaagccggaagcccc
tcttcccaccaggcccagtgctcctccagccgcctctctccccccacagacggccagggt
gatgggggagtggtgcgctactactggggggtgcctttctgtccgcgggggcagaaccca
gacgcctacacgcaggtgatcctgtcccagctggaggtgtatgagaagagcctgaaggag
gcccagaggggtttgctgaggaaggcaggctggggggagccagtcctccctgggccccca
gagagacccttctccaggaggggacgccccgagagacacagggcctcacgactcctggaa
gaggaggagagaggggaaaaacgtcaggaagagctagtggaggtggtagaggatgatgaa
gaggagggagagaagagggagagacggcggtcacggaggggggcagaagggagagggagg
agaggaagacaggaatggaaggactgccaggcactgtttgtgtcctctcctgaacaagag
gaaaaatctccctcacctgtatttcatgcagattccagtcagctaattcaacttcgaagg
agacttagtcttagaagagaagagaaaagactggcagaaacacaactgcctgacttaccg
gaggagagggaggaagacgagaaggaagaaaagagggatgatgaagaggatggagagaag
agggaggaggaggaagaagaggtggatgtcggaggcttagaagttcaagagacccaactc
agtgacgacagcactcaagacctcatggtcaccagccctgaacagccccagccagagagc
cagtccctgcctcggatccagacctttctttcatcaccccgtactctggaacagcgtgaa
gaggggatgttggtggttggagaggaggaggaggggcggaggagtggccctgtggtgatc
cctgctgtaggagaggatgttaggatggaggaggagggggatatcccagagcctgccttc
cctcagagccccagccccagcatggactgtcccatgtgcatgcatcccttctgcctgacg
gagattgagatgcacgctgcctactgtgacggtaccaccgatatcatggaggaggaaatg
gcagagagccacttgcaggtttcagtcaaggctcgtagaaagaggaccagaaggggagaa
atcattggagaggagcagcccagctcttctggcgctggcaagtag
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