Coregonus clupeaformis (lake whitefish): 121579420
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Entry
121579420 CDS
T08357
Name
(RefSeq) CCR4-NOT transcription complex subunit 8
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
121579420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121579420
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
121579420
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
121579420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
EKR
Motif
Other DBs
NCBI-GeneID:
121579420
NCBI-ProteinID:
XP_041749938
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All DBs
Position
13:complement(20205303..20209742)
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AA seq
285 aa
AA seq
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MPAALADTSQIICEVWASNVDEEMRKIRQIIQSYNFIAMDTEFPGVVVRPIGEFRSTVDY
QYQLLRCNVDLLKIIQLGLSFMNEDGDYPPGTTTWQFNFKFNLTEDMYSQDSIDLLQNSG
LQFKKHEEEGIDTLYFAELLMTSGLVLCENVKWLSFHSGYDFGYLVKLLTDTRLPEEEHE
FFQILNLFFPAIYDVKYLMKSCKNLKGGLQEVADQLELKRIGRQHQAGSDSLLTGMAFFR
MKELFFEDNIDDAKYCGRLYGLGSGSTQNQNGISSSSQEETNNKH
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgccagctgcactggcagataccagtcagattatctgtgaggtctgggcaagcaatgtg
gatgaggaaatgaggaaaatccgacagataattcaaagctacaacttcattgccatggac
acagaattccccggcgtggtggttcgacccattggcgagtttcgcagcacggtagactac
cagtaccagctcttgaggtgcaacgtggaccttctgaaaatcatccaactgggactgtca
tttatgaacgaggatggagactatccccctggaacgacgacatggcagttcaatttcaaa
tttaatttaacagaggatatgtactcccaggactcgatagacctacttcagaactccggc
ctccaattcaaaaagcacgaggaagaggggatcgacacgctctactttgctgagctcctg
atgacatctggtttagtgctgtgtgaaaatgtcaagtggctctcctttcacagcgggtat
gattttggctacctagtgaagctgttaacagacactcggctacctgaggaggaacatgag
ttcttccagatcctcaatctcttcttccctgcaatctatgacgtgaaatatctgatgaag
agctgcaagaacttgaagggaggactccaggaggtggctgaccagctggaactaaagagg
attgggagacagcaccaggccggctctgattccctgctcacagggatggccttctttagg
atgaaagagcttttctttgaagacaacattgatgacgcaaagtattgtgggcgattgtac
ggattgggctctgggtccactcaaaatcagaacggcatctcaagctcttcccaagaggaa
accaacaacaagcactga
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