Coregonus clupeaformis (lake whitefish): 121579432
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Entry
121579432 CDS
T08357
Name
(RefSeq) transient receptor potential cation channel subfamily V member 1-like isoform X1
KO
K05222
transient receptor potential cation channel subfamily V member 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
121579432
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cclu04040
]
121579432
Ion channels [BR:
cclu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
121579432
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GFIT
Motif
Pfam:
Ank_2
Ank
Ion_trans
Ank_5
Ank_3
Motif
Other DBs
NCBI-GeneID:
121579432
NCBI-ProteinID:
XP_041749954
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Position
13:complement(20757078..20780614)
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AA seq
802 aa
AA seq
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MSKSKGPEYPSFSLETDDRTDDERAQSRQVKKPDRLVSALGMGSSGGPKAPMDSDYQEEL
EEAAPKIRFNLNFDKKVRGLEENKEERDSKRFDIKRLFEAVSTGDVMKLEGLHQYLHQSK
KKLSNTEYQSYGKNVLLKALLNLRNGRNNTIEYLLDISEKMGDIKEFVNAAYTDSYYKGQ
TALHIAIERRSTYFVELLIKKGANVHAKACGKFFQLHDGPSFYFGELPLSLAACTNQPEV
VDFLLENAYQRVDVREKDSLGNMVLHALVVVADNTPENTDFITSMYDYILTTAARLHPKW
RLEDIENNQGLTTIKLAAKTGKIGLFKHMMHREFQKRETRHLSRKFTEWVYGPVHSSLYD
LASLDSYEKNSVLEIIVYSSDMPNRHEMLQIEPLNRLLEEKWDKFAARMFFFNFLVYLVY
LSVFTAIAYNRKKGTPPFTLEHTRQEYLRLAGQLFTAAGAFYFFVGGILDLKRKRPSLDT
LLIDGYSEILFFLQAIFFLASSVLYCCGREEYLGFFVLCLALSWVNLLYFSRGYRHMGIY
SVMIQKMILSDILRFLFVYVTFLIGFSAAVVTLLMEPELPANNTAKPINSTGEKGRTLFP
PTGEDSCTKPTFRNISHTIMELFKFTIGMGDLEFTEGYQYKEVFYMLLISYIVLTYILLL
NMLIALMSRTVEKMSLESTSIWKLQRAITILDLERSLPRCLRRRLRSGVDKDLGTRAGEK
DRRWCFRVEEVNWNKWNTNLGIINEDPGCGDTARLSPTHSSRTLGRERSWQGFLGNVSRR
QRTQPRQQTQVESTEMSPLSHI
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagtctaagggcccagagtacccttccttctctctggagacggatgacaggacg
gatgatgagagggcacagagcagacaggtgaagaagcctgaccggctggtgtctgctcta
ggcatgggcagttcgggggggcccaaagcccccatggactcagactaccaggaggagctg
gaggaggctgctcccaagatcagattcaatctcaattttgacaagaaagtacgaggtttg
gaggagaacaaagaggagagggacagcaagaggtttgacatcaagaggctgtttgaggcc
gtgtccactggtgatgtcatgaagctggaggggctgcatcagtacttgcatcagtccaag
aagaagctctccaacactgagtatcaatcgtatggtaaaaatgtcttgctgaaggctcta
ctgaatctgagaaacggcagaaataacacaattgaatatctccttgacatctcagagaag
atgggggacatcaaggaatttgtaaatgctgcatacacagacagctattacaaaggccaa
acagcccttcatattgccattgagagaaggagcacctattttgttgagctattgatcaag
aaaggagcaaacgtccatgccaaagcctgtgggaaattcttccagctccatgatggaccc
agcttctactttggtgagctgcctctgtccctggctgcgtgcaccaaccagcctgaggtg
gtggacttcctgctggagaacgcctaccagcgtgtggacgtgagggagaaggattccctg
ggtaacatggtgctgcatgccctggtggtggtggctgataacacaccagagaacactgac
ttcatcacctctatgtacgactacatactcaccacggctgcccgcctgcaccccaaatgg
aggctggaggacatagagaacaaccagggcctgacgactataaaactggctgccaagact
ggcaaaatcgggctatttaagcacatgatgcatcgtgaattccagaagagggagaccaga
cacctgtcccgtaaattcactgagtgggtttacggacccgtccactcctccctgtatgac
ctggcctcactggactcctacgagaagaactctgtcctggagatcatagtctacagcagt
gacatgcctaatcgccatgagatgctgcagattgagcctctgaacaggctactggaggag
aagtgggacaagttcgcagctcggatgtttttcttcaacttcctggtttacctggtttac
ctctcggtcttcactgctatcgcctacaacaggaagaaaggaacgccaccttttactctg
gagcataccagacaggagtacctgcgactcgccgggcagctttttacagcagcgggagcc
ttctatttcttcgtaggagggatattagacttgaagagaaaacgtccaagcctggacact
ttgctgattgacggatacagtgaaatccttttttttctgcaggcgatcttcttcctggcc
tcctcagtgctgtactgctgtggtagggaggagtacctgggtttttttgtgctgtgtctg
gctctcagctgggtcaacctgctctacttctccaggggatacagacacatgggcatctac
agtgtcatgatacagaagatgatcctaagtgatatcttgcgctttctctttgtctacgtt
accttcctcattgggttttcagcagcggtggtcactttgctaatggaacctgaattgcca
gccaataatacagcaaagccaataaacagcacaggtgaaaaaggtcgtacccttttccct
cccactggggaggattcgtgtacgaaacccaccttcaggaacatctctcacaccatcatg
gagctgttcaagttcaccattggcatgggagacctggagttcacagagggataccagtac
aaggaagtgttttacatgctgctaatctcctacatcgtgctcacctacatcctgctgctc
aacatgctcatcgccctcatgagccgcactgtggagaagatgtccctggagagcaccagc
atctggaaactacagcgggccatcaccatcctggacctggagaggagcctgccccgctgc
ttgagaaggaggcttcgttctggggtggacaaggacctggggaccagggctggagagaaa
gaccgccgatggtgcttcagagtggaggaagtcaactggaataaatggaacaccaacctg
ggcataatcaatgaggatccagggtgcggagatacggccaggctgtcccctacacacagt
agccgaacgctaggcagagagaggagctggcaggggttcctgggaaatgtcagtcgaaga
caacgtacacagcctcggcaacaaacacaagtagagagcacagagatgtcccctctcagc
catatctga
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