Coregonus clupeaformis (lake whitefish): 121579540
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Entry
121579540 CDS
T08357
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein U-like protein 1
KO
K15047
heterogeneous nuclear ribonucleoprotein U-like protein 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cclu03041
]
121579540
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121579540
Spliceosome [BR:
cclu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
hnRNP proteins
121579540
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
121579540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SPRY
SAP
AAA_17
Zeta_toxin
AAA_18
KTI12
Motif
Other DBs
NCBI-GeneID:
121579540
NCBI-ProteinID:
XP_041750156
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All DBs
Position
13:43709794..43719936
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AA seq
888 aa
AA seq
DB search
MSGINVKKLKVNELKEELQLRGLDTRGLKADLVVRLQSALEAEAAGEVDGPPSADVGEEG
DEQHNICGDAGDGDGHSDEVKDDGEEEQDIEDNEVQLVPQAEEKQFDEANGDGEQSEEDR
QDGAQMYGQVPAMGYGMVDFTEDVMKPQIPQACESDKRQEPQLAMPEPQVLEAEMEEPDM
EEPEMEDPVQPEPLESASIEPEAKPVEMPEIKTEEFVMKVELKKEQEQLKEEKEPQQPKA
HLSEPANEWEAEQATQAKTEDDRYSRKRPYDEGRGYGYYEHREERRARSPQPPAEEEEED
FDDTLVAIDTYNCDLHFKVSRDRYSGYPLTIEGFAYLWSGARVSYGVNKGRVCFEMKINE
EISVKHLPSSEPDPHVVRIGWSLDTCNTQLGEEPFSYGYGGTGKKSSKCKFEDYGEKFGE
NDVLGCYIDFDSGEEVEMAFSKNGKWLDVGFRVSREELAERPLFPHVLVKNCAIEFNFGQ
KEQPFFPLPEGYTFIQNVPLENRMRGTVGPATKADCELLMMVGLPASGKTTWALKHAEEH
PAKKYNILGTNTIMEKMKVMGLRRQKNYSGRWDVLIQQATQCLNRLIQIAARKKRNYILD
QTNVYGSAQRRKMRPFEGFQRKAIVICPTDEDLKERTLKRTDEEGKDVPDHAVLEMKANF
VLPEAGEFLDDVTFIELQREEADTLVKQYNEEGRKAGPPPDKRFDNRQGGFRGRGAPYQR
YDNRGGPQGGRGGYQSRGGPQGGNFRGGYNHGGYQQNRWGNNRDGAAGGQRGYNRNQQSG
VGYNQHRQGQYNKGATGSYSQGQPQTYNQGNYNQGYNYGSFSQYPGYSQSYSQTPAAAPA
ATGQTYNQQYQQYAQQWQQYYQNQSQWNQYYNQYGNYSQGSQGSQGTQ
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaatcaatgtgaagaagctcaaagtcaacgagctgaaggaggagcttcagctg
cgaggcctggatactcgtgggctgaaggcggatcttgtcgtaaggttgcagtcagcactt
gaggccgaggctgcaggtgaagtggacgggccaccgagtgccgatgttggagaggagggg
gatgagcaacacaatatttgtggagacgctggagatggtgatggccactccgatgaagtt
aaagatgatggggaagaagaacaagatattgaggacaatgaagtacagttagtcccgcag
gcagaagagaaacagtttgatgaggcgaatggtgatggtgaacagagtgaagaagaccgc
caggatggggcacagatgtatggtcaagtccctgcaatgggatatgggatggtcgatttc
accgaagatgtgatgaagccacagattccgcaggcgtgtgagtcagacaaaagacaagag
ccacagttagcaatgccagagccgcaggtgttagaagcagagatggaggaaccagatatg
gaagaaccggagatggaagacccagtgcaaccagaaccactggagtcggcatcaattgag
cctgaagcaaagcctgtggagatgcctgaaattaagacagaggagtttgtgatgaaagtg
gagttgaaaaaggagcaggagcagttgaaggaagagaaggagccacagcagccaaaggct
catctttcagagccagccaatgaatgggaggctgagcaggcgacccaggccaaaacggaa
gatgaccgatacagccgtaagaggccatacgatgaaggccgtggctatggatactatgaa
catcgggaagaaagaagggcacgttctccccagcctccagcagaggaagaggaagaagat
tttgatgacactcttgtggctattgatacttataattgcgatctgcacttcaaggtatcg
cgtgacaggtatagtggatacccgctcaccatcgaaggttttgcatacctgtggtcaggt
gcacgggtttcctatggcgtcaacaaagggcgtgtctgctttgaaatgaagataaacgag
gagatctctgtgaagcaccttcccagcagtgagcctgatcctcatgtagtgcgcattggc
tggtccctggacacctgcaacacacagctcggtgaagaaccattctcttatggctatgga
ggaactggcaagaaatcttccaagtgtaaatttgaggattacggggaaaagtttggtgaa
aacgatgtccttgggtgctacattgacttcgatagcggtgaggaagtggagatggccttc
tcaaagaacgggaagtggttggatgtgggcttccgtgtgtcacgggaggagttggctgag
cggccgctctttccccacgttcttgtgaagaactgtgccattgaattcaactttggccag
aaagagcagcccttcttccccctgcccgagggatacaccttcattcagaacgtccctctg
gagaacaggatgcggggaacagttgggcctgccaccaaggctgactgtgagctgttgatg
atggttggcctgcctgcgtctgggaaaaccacttgggccttgaagcacgcggaggagcac
cctgcaaagaaatacaacatcctgggcaccaacaccataatggagaagatgaaggtgatg
gggctgcggcgtcagaagaactattctggtcgctgggatgtcctgatccagcaggccaca
cagtgtctgaacaggctgatccagatcgctgcccgcaagaagcgtaactacatcctggat
cagacaaatgtatatggatcagcccagagacgaaaaatgcgtccttttgaaggttttcaa
cgcaaggctattgtaatttgtcccacggacgaggatttaaaagagcgaacgttaaagcga
actgatgaggaagggaaggatgttcccgatcatgctgtattagaaatgaaagccaacttt
gtgctcccagaagctggtgagtttcttgacgatgtgaccttcatcgagctgcaacgagaa
gaggctgacacgctggtaaagcagtacaatgaggagggccgcaaggccggcccaccccca
gacaaacgctttgacaaccgccaaggaggattccgtggtcgcggtgcaccttaccagcgc
tatgacaaccgtggtggcccccaaggtggaaggggaggctatcagagtcgtggtggaccc
caaggtggcaacttcagaggagggtataaccatggaggctaccaacagaaccgctggggg
aacaaccgtgatggtgctgcaggaggacaacgtggctacaaccgcaaccagcaatctgga
gtgggctacaatcagcaccgccaaggacaatataacaagggagcaactgggagttacagc
caaggacagccacagacatacaatcaaggcaactacaaccagggttacaactacggcagc
ttcagccagtacccaggttatagccagagctacagccaaactcccgctgctgctcctgct
gccactggacagacctacaaccagcagtatcaacagtatgcacagcagtggcagcagtat
taccagaaccagagccaatggaatcagtactacaaccaatatggtaactacagccagggt
tctcagggctcccagggcacacagtag
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