Coregonus clupeaformis (lake whitefish): 121579628
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Entry
121579628 CDS
T08357
Name
(RefSeq) ras-related protein Rab-39B
KO
K07925
Ras-related protein Rab-39B
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
121579628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121579628
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
cclu04031
]
121579628
Membrane trafficking [BR:
cclu04131
]
Autophagy
Other autophagy associated proteins
Rab GTPases
121579628
GTP-binding proteins [BR:
cclu04031
]
Small (monomeric) G-proteins
Rab Family
Rab39/42 [OT]
121579628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ras
Roc
Arf
MMR_HSR1
Gtr1_RagA
GTP_EFTU
AAA_22
TniB
Motif
Other DBs
NCBI-GeneID:
121579628
NCBI-ProteinID:
XP_041750316
LinkDB
All DBs
Position
13:complement(46557101..46560008)
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AA seq
213 aa
AA seq
DB search
MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKL
QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEEARSHVQPHSIVFLL
VGHKCDLESQRQVSQQEAEKLAGAYGMRYVETSARDAINVEKAFTELTQDIFELVKSGDI
NIQEGWEGVKSGFVPNVVHSSEEVTKSDRRCLC
NT seq
642 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgatatggctgtaccagtttcgactcatcgtcattggggactcgacagtagga
aagtcgtgcctgatccggcgattcaccgagggacgctttgcgcaggtgtccgaccccaca
gtcggtgtagacttcttctcacggctagtggagatagagccagggaaacgcattaaactt
caaatctgggacactgctggacaagagcgattcaggtctattaccagggcttactaccgt
aactctgttggggggctgctgctgtttgacatcaccaaccgtcgctccttccagaatgtg
catgagtggctggaggaggcccgcagtcatgtccagcctcacagtatcgtcttcctgttg
gtgggtcacaagtgcgacctggagtcccagaggcaggtgagccagcaggaggctgagaag
ctggcaggtgcctatggcatgcgttacgtggagacatcggctcgcgatgccatcaacgtg
gaaaaggccttcactgagctaacgcaggacatatttgagctcgtgaagagcggtgacatc
aacatccaggagggctgggaaggggtgaagagtggctttgtgcccaatgtggtgcactcc
tcagaagaggtcaccaagagtgaccgccggtgcctctgctaa
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