Coregonus clupeaformis (lake whitefish): 121579678
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Entry
121579678 CDS
T08357
Name
(RefSeq) transcription elongation factor SPT6-like
KO
K11292
transcription elongation factor SPT6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121579678
03036 Chromosome and associated proteins [BR:
cclu03036
]
121579678
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
121579678
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
121579678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
SPT6_acidic
Tex_central_region
Spt6_S1
S1
HHH_9
S1_RRP5
HHH_3
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
121579678
NCBI-ProteinID:
XP_041750408
LinkDB
All DBs
Position
13:48833605..48898378
Genome browser
AA seq
1758 aa
AA seq
DB search
MSDFIDSEAEESEEEFEEKDLKPKKTQAFMDDEEEEEELNTEDQDEHGNLRGLIDDDDDD
EEEKKSGGAGSGSDSEDEVRHRRKKRNYDDYLDDDDLDLIEENLGVKVKRRKKKYDRVKT
MDDDEDEEKDQIADEIFHRGDDDGEGELEEGETIDPPLHRHGERHDEEEEEEGEEESDID
DFIVDDDGQPITKKRGKKFSGYTDAALQEAQEIFGGDFDFAEFDADGAYEQGEEEEEDQD
EGGWDRPKKQTKRRVGRKSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRSIPVKPA
EDNELEEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNFSRKGPSTIAKIKEALNFMRNQ
HFEVPFIAFYRKEYVEPELNINDLWKVWQWDEKWCQLKSRKQNLTRLFRRMQGYQYEQIS
ADPDKPLADGVRPLDTADMERLKDVQSIDELSDVYSHFLLYYGRDIPKMQNTAKAASKKK
KLKKIKEVNEDGEEEEVEVEVEEEQKGPDLKLASRRDMYSICQSAGLDGLAKKFGLTPEQ
FGENLRDSYQRHETEQFPAEPVELAKDYVCSQFNSPEAVLEGTRYMVAMQISREPLVRHV
LRQTFQERAKININPTKKGKKDMDEAHFGYSFKYLKNKPVKELNGDQFLKMCQAEEEGLL
TIDICIDLIGVKGFAGDQMYFDEIKQFYYRDEFSHQVQEWNRQRTLAIERSLTQFLYPQM
AKELKNKLIAESKDNIIKSCCRRLYNWLKVAPYRPDQQAEEEEDDLMDESQGKGIRVLGV
AFADSRDTPVFCSLINGEGEVVDFLRLPYFLKRRNAWREDERDKKLQDIENLKKFLISKK
PHVVAVAGENRDAHMIMEDIKRTVSELEQESSLPAVGVELVDNELAMLYMNSIKSQTDFR
DYPPLLRQAVSVARKIQDPLVEYSQVCSTDEDILCLKLHPLQEHVVKEDLLNALYCEFIN
RVNEVGVDVNRAISHPYTQSLVQFVCGLGQRKGSHLLKILKQNNTRLENRTQLVTMCHMG
PKVFINCAGFIRIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDAN
PAGALEEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRVPYRAP
NTEEVFNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDSTGLWQCPFCQQD
NFPELSEVWNHFDSGSCPGQAIGVRSRMDNGVQGFIPTKFLSDKVVKHPEERVKVGMTVH
CRIMKIDIEKFNVDLTCRTSDLMDKNNEWKLPKDTYYDFDAETEDTKTEEELKKKQQRTT
YIKRVIAHPSFHNINFKQAEKMMESMDQGDVVIRPSSKGENHLTVTWKVADGIYQHVDVR
EEGKENAFSLGHTLWINTEEFEDLDEITARYIQPMAAFARDLLGHKYFQDCNGGNRKKME
ELLIKSKKEKPAFIPYFVSACKDLPGKFILGYQPRGKPRVEFVTISPDGFRYRSQMFPTV
NGLFRWFKDHFQEPVPGITPSSSSRTRTPASVNATPANINIADLTRAVNALPRNMTSQMF
SAIAAVTGQGQGQNANTTPAQWGSSQYGYTGGSSGGGGGSSSAYHVFATPQQPMATPMMT
PSYSYTTPSQQTMGTPQYPSSTPLSSHGHTHSSHGHTQSSHGHGHSSSSSSQHGHSSNTP
SSSSTSSRGRTPQKPKSSGSTAVDWGKMAEQWLQEKEAERKKQKTPRMTPRPSPSPMIES
TPMSIAGDATPLLDEKDR
NT seq
5277 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacttcatcgatagcgaggctgaggagtcagaggaggagtttgaggagaaagac
ctgaagcccaaaaagacccaggcgtttatggatgatgaggaagaggaggaagagttaaac
acagaggaccaggatgagcacgggaacctgagggggctcatcgatgatgatgatgatgat
gaggaagaaaagaagagtggaggagcgggcagcggcagcgactcagaagatgaagtcaga
cacagacgcaagaaacgcaactatgatgactacctggatgatgatgatctggacctcatt
gaggagaacttgggcgtcaaagtcaagaggaggaagaagaagtatgaccgcgtgaagacg
atggacgatgatgaagatgaggaaaaggaccagatcgcagacgagatcttccacagagga
gacgacgacggagagggggagctggaggagggagagaccatcgacccgcccctccatcgc
catggtgaacgccacgacgaagaagaggaagaggaaggagaggaggagtcagatattgac
gactttatcgtggacgacgatggccagcccatcacaaagaagagaggcaaaaagttctca
ggatacacggacgcagccctccaggaggcccaggagatcttcggcggtgactttgacttt
gcagagttcgatgctgacggtgcgtatgaacagggtgaggaagaggaggaggaccaggat
gaagggggctgggaccggcccaagaagcagacgaagaggagagtggggaggaagagcatc
ttcgagatctatgagcccagcgagctggagagtagtcacatgacagaccaggacaacgag
atccgctccacagacatgccagagaggttccagctgcgctccatcccagtgaagcctgct
gaggataatgagttggaggaagaggcagagtggatctacagaaacgccttctcaaccccc
accatctccatgcaggagagtacagactacctggacagagggaccaccacaaacttcagc
aggaagggccccagcacgatcgctaagatcaaggaggccctcaacttcatgaggaaccag
cactttgaggttccgttcatcgcgttctacaggaaggagtacgtggaaccggaactcaac
atcaacgacctgtggaaggtctggcaatgggacgagaagtggtgccagctgaagagtagg
aagcagaacctgacgcgtctattccggaggatgcaggggtaccagtatgaacagatctct
gccgaccctgacaaacccctggctgacggcgtcagacccctggacacggctgatatggag
agactgaaagacgtccagtccatagacgagctgagtgatgtgtacagccacttcctgctg
tactatggccgagacatccccaagatgcagaacacagccaaggccgccagtaagaagaag
aagctgaagaagatcaaggaggttaacgaggacggtgaggaggaagaggtggaggtggaa
gtggaggaagagcagaaggggccagacctgaagctggcatctcgtagagacatgtacagc
atctgtcagagcgcagggctcgacggcctggcaaagaagtttggtctgactccagagcag
tttggggagaatctgagagacagctaccagcgccacgagacagagcagttccctgccgag
cctgtagagctggccaaagactatgtgtgcagccagtttaacagtcctgaggcggtgttg
gaggggactcgttacatggtggccatgcagatttccagggagcctctggtcagacacgtc
ctcagacagaccttccaggagagagccaagatcaacatcaatcccaccaagaaaggaaag
aaggacatggatgaggcccattttggctactccttcaagtacctgaagaacaagccagtg
aaggagctgaacggagatcagtttttaaagatgtgccaggccgaggaggagggacttctc
accattgacatttgcatcgacctcataggggtcaaagggtttgcaggtgaccagatgtac
tttgatgagatcaagcagttctattacagagatgagttcagccaccaggtgcaggagtgg
aacagacagaggaccctggccatcgaacgctccctcacacagttcctctaccctcagatg
gccaaggaactcaagaacaaactcatcgcagagtccaaggacaacatcatcaagtcgtgc
tgcaggaggctgtataactggctgaaggtggctccctacagaccagaccagcaggcggag
gaggaggaggatgatctgatggatgagagtcaaggaaaaggcatcagagtcctgggagtg
gccttcgcagacagcagagacacgccagtgttctgttctctgatcaacggagagggagag
gtggtagactttctccgtctgccttacttcctgaagaggaggaacgcatggagggaggac
gagagggacaaaaagctccaggacattgagaacctaaagaagttcctgatcagtaagaaa
cctcacgtggtggctgttgccggggagaatagggacgcccacatgataatggaggacatt
aagaggacagtgagtgagttggagcaggagtcttctctgcctgctgtgggagtggagctg
gtggacaacgaactggccatgctttacatgaacagcataaagtctcagactgacttcaga
gactaccctcccctgctgcgccaggccgtgtccgtagccaggaagatccaggatcccttg
gtggagtactctcaggtctgcagcacagacgaagacatcctctgcctcaaactacaccct
cttcaggagcatgtagtaaaggaggacctgctgaatgctctgtactgtgagtttataaac
cgggtcaacgaggtgggggtggatgtgaacagggccatatctcacccctacacacagagc
ctggtccagttcgtctgtggcctcggacaaaggaagggatcgcacctgctcaagatcctg
aagcaaaacaacactcgtctggagaaccggactcagctggtcaccatgtgtcacatgggc
cccaaggtcttcatcaactgtgccggcttcatcaggatagacacggcctcgctcggagac
agtacggactcatacatcgaggttctggacgggtccagagtgcacccggagacgtatgag
tgggccagaaagatggcggtggacgctctggaatacgatgagtcagcggaggacgccaac
ccggccggtgcgctggaggaaatcctggaaaacccggagcgcctcaaagacctggatctg
gacgccttcgctgaggagctggagagacagggttatggtaacaagggcatcacactgtat
gatatccgtgctgagttgagctgcaggtataaggacctgagagttccttacagagctcct
aacactgaggaggtgtttaacctgctcaccaaggagacacctgagaccttctatataggg
aagctgatcaccagtgtagtgacaggcattgctcaccggcgcccccaaggggagagttat
gaccaggccatcaggaacgactctacaggactgtggcagtgccctttctgtcaacaggac
aacttccctgaactcagcgaggtgtggaaccattttgacagtggatcgtgtccgggccag
gccatcggtgtgaggtctcgaatggacaacggtgtccagggcttcatccccaccaagttc
ctcagtgacaaggtggtcaagcaccctgaggagagggtcaaggtgggtatgacagtacac
tgtcgcatcatgaagattgacattgagaagttcaacgtggacctgacgtgtcgtacgtct
gacctgatggataagaacaatgagtggaagcttcctaaagacacctactacgactttgac
gcagagacagaagacactaagacagaggaggaactcaagaagaaacaacagagaaccacc
tatataaagcgtgtgatcgcccacccgtcctttcacaacatcaacttcaaacaggctgag
aagatgatggagtccatggaccagggagatgttgtaatcaggcccagcagcaagggagaa
aaccacctcactgtcacatggaaggtggctgatggtatctaccagcatgtggatgtgaga
gaggagggcaaggagaacgccttcagcctgggacacaccctctggatcaacacagaggag
tttgaggatcttgatgagatcacagctcgttatattcagccaatggcagcgtttgctcgc
gacctcctgggacataagtacttccaggactgtaacggagggaacaggaagaaaatggag
gaattgttgattaagtctaaaaaggagaagcctgcgttcatcccctactttgtctcagcc
tgtaaagacctgcctgggaagttcattttggggtaccaacctcgcggaaaaccacgtgtt
gagtttgtgaccatcagtcctgacgggttccgctaccgctcccagatgttccccaccgtt
aacggactgttccgctggttcaaagaccacttccaggaaccggtaccaggcatcaccccc
agcagtagtagtcgaacacggacacctgcgtctgtcaacgctacaccagctaacatcaac
atcgcagacctgacgcgagcggtcaacgctctcccgcgcaacatgacctctcagatgttc
agtgccatcgccgcggtgacagggcagggccagggccaaaacgcaaacaccacgcctgcc
cagtggggctccagccaatacggttacaccgggggcagcagcgggggtgggggaggcagc
tcctcagcctatcacgtatttgcaacgccccagcagccgatggcgacgcccatgatgacc
cccagctactcgtacaccacccccagccagcagaccatgggtacgccccagtacccctcc
tccacccccttgtcctcccacggacacacccacagcagccatggtcacacacagagcagc
catgggcatggccacagcagcagcagcagcagtcaacatggacactcatccaacacacct
tcctcctcctccacctcttccagaggacgcacgccgcagaagcctaagtcgagcggcagc
acggcggtggactggggcaagatggcggagcagtggctccaggagaaggaggcagagagg
aagaagcagaagacccccaggatgaccccacggccttcccccagccccatgatcgagagc
acccccatgtccattgctggagacgccacacccctcctggacgagaaggaccgatag
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integrated database retrieval system
