Coregonus clupeaformis (lake whitefish): 121579687
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Entry
121579687 CDS
T08357
Name
(RefSeq) transcription factor Sox-19a isoform X1
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121579687
Transcription factors [BR:
cclu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
121579687
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
HTH_24
Motif
Other DBs
NCBI-GeneID:
121579687
NCBI-ProteinID:
XP_041750422
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Position
13:49206269..49216770
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AA seq
320 aa
AA seq
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MVNMYNIIEHQLKSSVPSHHPGTGMPPANGVGGHGGGHTGSKSPAIQPDPMDKVKRPMNA
FMVWSRGERRKMAQENPKMHNSEISKRLGVAWKSLTDAEKRPFIDEAKRLRAVHMKDYPD
YKYKPRRKTKPIPKNNTLAAQYQMSAGNHLLSASAAQGQVGNPRMDAYGWGHTGGYTAAM
QSEALGYSQQLHRYDLSALQYQSSMAQAQAYMNGANAYSPMSYSSSPQQVSPVMSMVKQQ
SDSHSMSPSPTGPHSPLQQHHHQAHQQHQTQRGVQGEHLRDMISMYMPGGDASEAQRGYS
VSAANIQQHYLGGSAPLTHL
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggtaaatatgtataacattatagagcaccaactcaagtcctctgttccctcacatcat
cctggaacaggaatgccacctgcgaacggagtaggggggcacgggggtggccacacaggt
tccaaatcaccggcaatccaacctgacccgatggacaaagtcaagcggcccatgaatgcc
ttcatggtctggtctcgcggtgagcgaaggaaaatggctcaggaaaatcccaaaatgcac
aattctgagatatccaaacgactgggtgtcgcgtggaaatctcttacagacgccgagaaa
aggcccttcattgacgaggcaaagcgcctccgcgccgtgcacatgaaggattatccagac
tacaaatacaagccccgtcgtaaaaccaaaccgattccgaagaacaatactctagccgcg
cagtatcagatgtcggccggtaaccacctgctgagtgcgtccgcggctcagggacaagtt
ggaaaccccagaatggatgcatatggctggggccacacagggggctacactgcggcgatg
cagagcgaggcgctcggctacagccagcagcttcaccgctacgacctgtcagcacttcag
tatcagtccagcatggcccaggcccaagcctacatgaatggtgccaacgcatacagcccc
atgtcctacagcagcagcccccagcaggtcagcccagtgatgtccatggtgaagcagcag
tctgatagccacagcatgtccccctcccccaccgggccccacagccccctccagcagcac
catcaccaggcccaccagcagcaccagacccagcgtggtgtccagggagaacatctcagg
gacatgatcagcatgtacatgcctgggggagatgcctcagaggcccagagagggtactcc
gtctctgcagcaaacatccagcagcattacctgggagggtcagctccactcacccacctt
tga
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