Coregonus clupeaformis (lake whitefish): 121579725
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Entry
121579725 CDS
T08357
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
121579725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cclu03021
]
121579725
03036 Chromosome and associated proteins [BR:
cclu03036
]
121579725
Transcription machinery [BR:
cclu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
121579725
Coactivators
SAGA/TFTC/STAGA complex
121579725
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
121579725
STAGA complex
121579725
TFTC complex
121579725
SAGA complex
121579725
SLIK complex
121579725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
CENP-S
TFIID-31kDa
Bromo_TP
Motif
Other DBs
NCBI-GeneID:
121579725
NCBI-ProteinID:
XP_041750498
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All DBs
Position
13:complement(52295715..52322559)
Genome browser
AA seq
639 aa
AA seq
DB search
MAEERRPKQCTVVLPTESMKAMAESIGVGQLQEESCAALSEEVSYRIKEIAQDALKFMHH
GKRCKLTTSDIDHALKLKNVEPLYGFQSQEFIPFRFASGGGRELHFYEEKEVDLSDIINT
PLPRVPLDVSLKAHWLSIEGVQPAIPENPPPAPKEQQKAESTEPLKAVKPGQEEEGGSIQ
KGQGATSAEAKGKKEGLMRMKPRSTHELSVEQQLYYKEITEACVGSCEAKRAEALQSIAT
DPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAV
VTCIVSKQLCLRPDVDNHWALRDFAARLMAQSCKTFSTTTNNIQSRITKTFTKSWMDDKT
QWTTRYGCIAGLSELGPDVIKTLILPRLTVEGARIKSVSDGPVVSNIDKIGADHVQSLLL
KHCASVIAKTRPLPDNVEQYRVDYGYLGPMLCSHVVKARAQAALQAQQVNRTTLTITQPR
PTLTVSQSGIGGSGGSRTPSIIKVPSSLTLMSTRPGTPTQPSPPATKYIVMATSSGASST
QQVITLSSSSASSVTSTVASATSTLQPLVKLESGGAGSLGGSRPLQKYIVVSLPTSTSSS
LESKSGVLPPSSSTSPILLEAGMKMERSDSPGASTQSPH
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggctgaggagcggaggccgaagcagtgcactgtggttctgcccactgagtcgatgaag
gccatggcagagtccattggagtggggcagctacaggaggagagctgtgccgccctgagc
gaggaggtcagctacagaataaaggagatcgctcaggacgcgttgaagtttatgcaccat
ggaaagagatgtaaactgacgaccagcgacatagatcatgctcttaaactgaagaatgta
gagcctctgtatggcttccagtcgcaggagttcatcccgttccgcttcgccagcggagga
gggcgggagcttcacttctacgaggaaaaggaggtggaccttagtgacatcatcaacaca
cccctccctagagtcccacttgacgtttcgctgaaagctcactggttaagtattgaaggt
gtccagcctgctataccagagaacccacccccagcccccaaagagcagcagaaggctgaa
tctacagagcccctcaaagcggtcaagcctggtcaggaggaggaggggggctccatccag
aagggccagggtgctacatctgcagaggctaaaggtaagaaggagggtctgatgaggatg
aagccccgcagtactcacgagctctcagtggagcagcagctttactacaaggagatcaca
gaggcctgcgtcggatcctgtgaggccaagagagcagaggctttacagagtatcgctaca
gaccctgggctctaccagatgctccccagattcagcacttttatttctgaaggggtccgt
gtgaacgtggtgcagaacaacctggccctgctcatctacctgatgaggatggtcaaggcc
ctcatggacaaccccacactctacctggagaaatatctgcatgagttgatcccagcggtg
gtgacgtgtatagtgagtaagcagctgtgcttgcggcctgacgtggacaaccactgggct
ctgagggacttcgctgcccgtctcatggcccagagctgtaagaccttcagcactaccacc
aacaacatccagtcacgcatcaccaagaccttcaccaagagctggatggatgacaagact
cagtggacaacacgctacggctgcatcgctggactgtctgaactaggacctgacgtgatc
aagactttgatccttcccaggctcactgtagaaggagctcgtatcaaatcagtgtctgat
ggacccgttgtctctaacatcgataagataggagcagaccacgtccaaagccttttactg
aaacactgtgccagcgtcatcgctaaaactcgtcccctgcctgacaacgtggagcagtac
cgggtggactatggttatcttgggcccatgctgtgttctcatgtggtcaaggccagggcc
caggcagcactacaggcccagcaggtcaacagaaccacactcaccatcacacagcctcgg
cccaccctaacagtgtctcagagcgggataggagggtcaggggggtcccgtacccccagc
atcatcaaggtacccagctccctcaccctcatgtccacccgaccaggcaccccaacacag
ccatcgcccccggcaaccaagtacatcgtcatggcaaccagctcaggcgcatcttccacc
cagcaggtgatcacgctgagttcctcctctgcctcctcagtgaccagcacggtcgccagc
gctacctccaccctgcagcctctggtcaagctggagtccggaggggccggcagcctgggg
gggtcgcgacccctccagaagtacattgtggtgtccctccccacgtccacctcctcctct
ctggaaagtaagagtggcgtgctccctccctcctcctccacctcccccatcttgctggaa
gccgggatgaagatggaacgctcagactcccccggcgccagcacacagtccccgcactga
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