Coregonus clupeaformis (lake whitefish): 121579798
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Entry
121579798 CDS
T08357
Name
(RefSeq) Down syndrome cell adhesion molecule homolog isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121579798
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
DSCAM family
121579798
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
Ig_2
fn3
ig
Ig_DSCAM-DSCAML_C
V-set
C2-set_2
Pur_ac_phosph_N
V-set_CD47
Ig_6
C2-set_3
Interfer-bind
fn3_2
Motif
Other DBs
NCBI-GeneID:
121579798
NCBI-ProteinID:
XP_041750634
LinkDB
All DBs
Position
13:24908836..25067825
Genome browser
AA seq
2036 aa
AA seq
DB search
MWILAIIFFQCILNVFSEDLRSSLYFVNASVQEVVFASTTGTSVPCPAVGVPPASLRWYL
ATGEEIYDVPGIRHVHPNGTLQIFHFNPSSFSNLIHDNTYYCTAENPSGKIRSQDVHIKA
VLREPYTVRVEDQKAMRGNVAVFKCIIPASVEAYITVVSWEKDTVSINVQTPRFLITSTG
ALYILDVQNEDGLYNYRCMTRHRYTGETRQSNSARLFVSDPTNSAPTILDGFERREVMTS
HRVELPCKASGHPAPKYRWLKDNRPLEPDSRFRQSVTGLLIERAQSSDTGNYVCEVWNSY
GNAEVVGRLQVKEPLKAVVSPKKVKGSVGSQVSLSCSVSGSEEYELSWYRNGEIIYPGNS
VRMTGNNRENLVMAGMAKSDGGAYQCFARNGKMSTQDFVQVILEDGTPKIISSFSEKVFG
TNEFVSLFCTVKGTPEPRVTWTLDDEPVIRDSRHRIGHYTNQEGHVVSHLNISQTTGPDG
GVYRCICNNSAGAVSYQARINVRGPASIRPMKNLTAIAGRDMYIHCRVIGYPYYSIKWHK
DANLLPYNHRQRAFENNGTLKLYDVQKDVDEGEYTCSVLVSPSLSTSQSVHVSVKVPPTI
HPFEFPRFSIGQRVFIPCVVMSGDQPVFITWQKDGRPIPASLSVTIDNIDFTSSLRISNL
SLLHNGNYTCIARNQAAIVEHQSQLIVRVPPKFVVQPKDQDGIYGKAVILNCSAEGYPVP
TIVWKYSKGAGVPQFQPIALNSGFRIQVLVNGSLLIKHVLEEDSGYYLCKVSNDVGADVS
KSMYLNVKIPAMITSYPNTTLATQGSEKRMSCTAHGEKPIMVRWEKEERIINPESSHRYV
VTVKEVADEVISTLQIRPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEVEIREV
KDRTIALRWTMGFDGNSPITGFDIECKNKSGSWEMAQRTKDVSPQLNQATIIDLHPSSTY
NIRMFAKNHIGKSEASNELTITTDEAAPDGPPQDVQLEAFSSQSIRVSWRAPKKHLQNGA
IRGYQVGYREFSTGGNYQFNVITMESTGDNDHSESVTLDNLKKFTQYGVVVQASNSAGTG
PSSQEVISTTLEDVPSRPPENVQATAASPEIISLSWLTPPKDALNGILLGFRVIYWANLP
DGELGEIRNVTTSKPSLELDGLEKYTNYSIQVLTFTRAGDGVRSEQIFTRTKEDVPGPPA
GVKAAAASNSVVFVSWLPPLKLNGIIRKYTVFCSNPHPTVSSEFEAAPDIFFYRIPNLSR
NRQYSIWVVAVTAAGRGNASDIITIKPLAEAPAQILTFNGTVTTPWMRDIVLPCKAVGDP
APTVKWLKETNGSPAPAVIDSRRIVQGNGSLVIRTVKAEDSGNYTCVASNSFGPDKIILN
LQVQVPPDQPRLTVTKTTTTSITLSWIPGDNGGSSIRGYILQYSEDNSEKWGNFAISPSE
RSYRLENLKCGTWYKFTLTAQNAVGPGRISEIIEAKTHGKEPQYSKEQELFTSINATRVR
LNLIGWNNGGCPITSFTLEYRSVESPTWTTAQRTSLTKSYILYDLAEATWYELQMKVFNS
AGSAEKRVKFATLSYDGSTIAPLVKAPTVSVDSTSSNEGLKMVTIISCVLVGIVLVFVLL
LVLRRRRREQRLKRLRDAKSLAEMLMSKNTRPADTINKQQQTLRMHIDIPRAQLLIEERD
TMETVDDRSTVLLTDNDFGETQKQKSSTVTHTVHYQSLSQATGPLVDVSDARPGTSKSNP
TARRTAKAGPAARNRYASQWTLNRPHPPVSAHTLSTDWRLPTPRVAGSVDKESDSYSVSP
SQDTDRARSSMVSTESASSTYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQMTTG
TNDYTDSLTSSTPSESGICRFTASPPKPQDVSRVMNMAAPKAHRPGGELVHLPPYLRMDF
LLNRGMSCSGTGGRGGAGGEGAMGQACLEPQKSRSLKRPSRMAPPTPTEAPQASSRASSR
DPVAQWQPGSAATLPHREGSELAQAAKLSTSQESLLDSRGQLKQTNNPYAKSYTLV
NT seq
6111 nt
NT seq
+upstream
nt +downstream
nt
atgtggatattggctatcatctttttccagtgcatcttgaatgttttcagtgaagatcta
cgttccagcttatattttgtcaatgcatctgtgcaagaggtagtgtttgccagcaccaca
gggacctcggtgccctgtcccgccgtaggcgtgccccccgcctcgctgcgctggtacctg
gccaccggagaggagatctacgatgtccccgggatccgccacgtgcaccccaatggcacc
ctccagatcttccacttcaacccctccagcttcagcaacctcatccacgacaacacctac
tattgcacagcggagaacccttcagggaaaatcaggagccaagatgtccatattaaggct
gttctacgagagccctacacggtccgtgtggaggaccagaaagccatgagaggcaatgtg
gcggtgttcaagtgcattatcccagcctcggtggaggcctacatcactgttgtgtcctgg
gagaaagacacagtgtcaatcaacgtccagacacctcggttcctcatcacctccacagga
gccctttacatcctggacgtgcagaatgaggatggattgtataattacaggtgtatgaca
cgccaccgctacacgggagagaccaggcagagcaacagcgcacgtctctttgtgtcagac
cccaccaactctgcgccgaccatcctggatggctttgagcgtcgcgaggtgatgacatca
caccgggtagagctgccatgcaaagcgtctggtcacccggcccccaaataccgctggctg
aaggacaaccgaccgctggagccggacagccgcttcaggcagagtgtgacggggctgctg
atcgagagagcccagtccagcgacacgggaaactacgtgtgtgaggtctggaacagctat
ggcaatgcagaggtggtggggaggctgcaggtcaaagagcccctgaaggcggtggtcagc
ccgaagaaggtgaaaggcagcgtgggtagccaggtgtctctgtcgtgcagcgtgagtggc
tcggaggagtacgagctgtcctggtaccggaatggagagatcatctaccctgggaacagt
gtccgcatgactggcaacaaccgggagaacctggtcatggctgggatggctaagagtgat
ggaggagcctaccagtgcttcgccaggaatggcaagatgtccacccaggactttgtccag
gtcatcctggaagatggcacgcccaagatcatctcctccttcagtgagaaagtgtttgga
accaacgagtttgtgtcactgttctgcacggtaaaaggcacgccggagcccagggtgacg
tggacgctggacgacgagccggtgatcagggactcccgccaccgcatcggccactacacc
aaccaggagggccacgtggtcagccacctgaacatcagccagaccacagggccggacggg
ggtgtctaccggtgcatctgcaacaattcggccggggcagtctcctaccaggcgcgaata
aacgtaagagggcctgccagcatacgaccaatgaaaaaccttaccgccattgctgggcgg
gacatgtatatccactgccgcgtcattggctacccgtactactccattaagtggcacaag
gacgccaacctgctcccctataaccaccggcagcgggcgtttgagaacaatggcacgcta
aagctgtatgatgtacagaaggatgtggatgagggagagtacacgtgtagcgtgctggtc
tcgccttctctgtccaccagccaaagtgtgcatgtcagtgtgaaagttcctcccaccatc
catcccttcgagttccctcgtttctccatcggccagcgtgtgttcattccatgtgtggtg
atgtcaggtgaccagcctgtcttcatcacctggcagaaggacggtcggccaattccggcc
agcctgagcgtaaccatcgacaacatagacttcaccagctccctgcgtatctccaacctg
tctctcctgcacaatggcaactacacctgcatcgcacgcaaccaggccgccatcgtggaa
caccagagtcagctcatcgtcagggtccctcccaagtttgtggtgcagcccaaggaccag
gacggcatctatgggaaagctgtgatcctcaactgctccgcagagggataccccgtccct
accatagtgtggaagtactccaaaggtgcaggggttccccagttccagcctatagccctg
aactcaggcttccgtatccaggtgctggtcaacggctctttgctaatcaaacacgtgctg
gaggaggacagcggctactacctgtgtaaggtcagcaatgatgtgggagctgacgtcagc
aagtccatgtacctcaacgtcaaaatcccggccatgatcacgtcgtaccccaacaccacg
ctggccacgcagggcagtgagaagaggatgagctgcacggcccacggggagaagcccatc
atggtgcgctgggagaaggaggagcgcatcatcaacccggagagcagccaccgctacgtg
gtcaccgtcaaagaggtggccgacgaggtcatctccaccctgcagatccggcctacagtg
agggaagactctggcttcttctcctgccatgccatcaactcctatggtgaagacagaggg
atcattcagctaacagtgcaagagcccccggaccctcctgaggtggagatcagagaggtg
aaggacaggactattgccctccgctggaccatgggcttcgatggaaacagcccaatcaca
ggcttcgacattgagtgcaagaacaaatcaggctcctgggaaatggcccaaaggaccaaa
gacgtgtctccccagctcaaccaggccaccatcatagacctgcacccctcctccacctac
aacatccgcatgtttgccaagaaccacatcggcaagagtgaggctagcaacgaactcacc
atcaccacagacgaagcagctcctgatggtcccccacaagatgtgcagcttgaagctttc
tcctctcagagcatcagagtctcctggagggcccctaagaagcacctccagaacggggcg
atccggggctaccaggtgggctacagggagttcagcaccggggggaactaccagttcaac
gtcatcaccatggagtcgacgggggacaatgaccacagtgagagtgtcaccctggacaac
ttgaagaagttcacccagtatggggtggtggtgcaggccagcaacagcgctgggacagga
ccctcctcccaggaggtcatctctaccacgctggaggacgttcccagccgacctccagag
aacgtccaggccacagcagcgtccccagagatcatctctctatcctggctgacccctcct
aaagacgccctcaatggcatcctgctcggcttcagggtcatctactgggccaacctgccc
gacggagagctgggggagatccgtaacgtgaccacctctaagccatctctggagctggat
ggtctggagaagtacaccaactacagcatccaggtgctgaccttcacccgggccggggac
ggggtgcgcagcgagcagattttcacccgcaccaaggaggacgttcctggtcctccggct
ggggtgaaggcagcggcggcatctaactcggtggtgtttgtgtcgtggctccctcctctc
aaactcaatggcatcatcaggaaatatactgtcttctgctctaacccacaccccacggtg
agcagtgagtttgaagcagctccagacatcttcttctaccgtatccccaacctgagcagg
aaccgccagtacagcatctgggtggtggccgtcaccgcagccggccgtggcaacgcaagc
gacatcatcaccatcaagcccttggccgaggctcctgctcagatcctgacattcaacggc
acagtgaccaccccctggatgagggacatcgtgttgccttgtaaggcggtgggcgaccca
gcccccacggtcaagtggctcaaggagaccaatggaagccccgcccctgctgtgattgac
agtagacgcatcgttcagggcaacggcagcctggtcatccgcactgtgaaagctgaggat
tctgggaactacacctgtgtggctagcaacagttttgggccagataaaatcatcctcaac
ctgcaggttcaagttcccccggaccagcctcgtctcaccgttaccaagacgaccaccacg
tccatcactctgtcctggataccaggagacaacggaggcagctccatcagaggctacatc
ctgcagtactcagaggacaacagtgagaagtggggcaactttgccatcagccctagtgag
cgttcctatcgactggagaacctgaagtgtggcacctggtacaagttcaccctgactgcc
cagaatgccgtggggccagggcgcatcagtgagatcatcgaagctaagactcatgggaaa
gaaccccagtactctaaagaacaggagctcttcaccagtatcaacgccactcgtgtcagg
ctcaacctgattggctggaacaacggcggctgtccaatcacgtccttcacgttagagtac
cgttcggtggagtctcccacgtggaccacggcccagcgcacctctctgaccaagagctac
atcctgtatgacctggccgaggccacctggtacgaactgcagatgaaggtgttcaacagc
gccggctcagcagagaagagggtcaagttcgccactctgagctacgacggcagtaccatc
gctccactggtgaaggctccaactgtgagtgtggacagtacgtccagtaacgagggtctg
aagatggtgaccatcatctcctgtgtgctggtgggcattgtgctggtctttgtcctgctg
ctagtcctcaggaggagaaggagggaacagagactgaagaggctcagagatgcgaaaagt
ttggcagagatgctgatgagtaaaaacacacgacctgcagacaccatcaacaagcagcag
cagacccttagaatgcacatcgacatcccccgagcccagctgctcatagaggagagagac
accatggagacagtcgacgacaggtccacagtgctgctgactgacaatgactttggggag
actcagaaacagaagtcatctacggttacccacaccgtccactaccagtccctgtcccag
gccaccggacctctagtggacgtatctgacgctaggccaggaaccagtaagtccaatccc
acagcccgccgcacagccaaagcaggccctgccgcacgcaaccgctacgctagccagtgg
accctgaaccgaccacacccgccagtctcggcccacaccctgagcactgactggagactg
cccacgccacgggtggccggctctgtggacaaggagagtgacagctacagcgtcagccca
tctcaggacacagaccgggcacggagtagcatggtgtccacagagagcgcctcgtccacc
tacgaggagctggcgcgggcctatgagcacgccaagatggaggagcagctgcggcacgcc
aagtttaccatcacagagtgcttcatctcggatacgtcgtcggagcagatgacgacgggt
accaatgactacacagacagcctgacgtccagcacgccctccgagtcaggcatctgcagg
ttcactgcctccccgcccaagcctcaggacgtcagccgagtaatgaacatggccgcgccc
aaggctcacagaccggggggcgagctagtgcacctgcctccttacctgcgcatggacttc
ctactgaaccgtggaatgtcatgctcgggcactggagggaggggtggcgcggggggggag
ggggccatgggccaggcctgtttggagccccagaagagtcgctccctgaaacggccgtca
cgcatggcgccccctactcccacagaggccccccaggccagcagcagggccagcagcagg
gacccagtggcccagtggcagcctggctcagcagccaccctgccccacagagaaggctca
gagctggcccaggccgccaagcttagcacctcccaagagtccctgctggactcacgagga
caactcaaacagaccaacaacccctacgcaaagtcctacacgctggtataa
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