Coregonus clupeaformis (lake whitefish): 121579802
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Entry
121579802 CDS
T08357
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X2
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121579802
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121579802
03036 Chromosome and associated proteins [BR:
cclu03036
]
121579802
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
121579802
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
121579802
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
121579802
NCBI-ProteinID:
XP_041750640
LinkDB
All DBs
Position
13:25404862..25446665
Genome browser
AA seq
1827 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGASSGTSTSLFGSTNTGGGGLF
SQQSNAFGAAKPASFGTFGTSTASSGGLFGTTNSNPFGGASTSLFGASGFTQQAAQPGTT
VKFNPPTGSDTMVKGGVTASINTKHQCITAMKEYENKSLEELRFEDYQAGRKGPTNPMAA
PTGGLFGTAAAATPSTGATGLFGSSATNTGFSFGQAKTSFGTSTGGFGTATGSLFGQQQP
QQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGATAASQAGGLFGNT
AQTTPATGFGTGTGLFGQTNTAFGNVGTQSLFGNKTAGFGATTTSAPSFGTGTGLFGNKP
ALTLGTATNTSNFGFGPTAAGGSLFGNKTAAGGLGSGLGAGFGAVGTGPMSLFGNNKTLG
STLGTMGGFGVQGFSTGTNTLGFGAPQQPVALMDPNAVAAQQAVLQQQINALAYSPFGDS
PLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLF
DGLDDDEPSLTNGAFIPRKSIKKLVLKNLNGSSLYSSPINRDSDDLSSPPEYPLNGLGAS
VDEDDDVREVVEGGAEDHLEINKFYTNPIAKPIPQPSLQDTISELNAHRVGARGRNGLEV
SSEDISLGDDSIQEEREEEVPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTV
GRKGYGSVFFHGEVNVTGLNLDEIVHFRRKEVIVYLDDKNKPAEGEGLNRRAEVTLDGVW
PNDKTTCTQIKSPERLSEINYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLHD
SDEDEDVPLKVDPKKLKTATTLPPGLQQLPTFQQQEAPQAQSTAVLELLNRVSEVDSDMA
DITQDAPGESILGGEEGESVMGEEKGSRLGTVTPVEHDSVSASSQIASSLGINPHTLQIM
KASLFAEDDDDMFQEQGGMKSSLDVTSPHIHLPGTQGRPSIGGLLQTRFSGTGLFFQHHD
VPFGGGLPGRQSMSRASPAVPDPSRVSPWPSFLLPAPTAEATVRTVGARRLGGPVDLENS
VTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDGLSGAGDKEQDHGDTGAGGFGFLPK
PAKSKPLSDSPFKVVIEQVVGLEPRDSEESQAVDQRPLEIGLKHSSISTEGVCPFIQPQS
GVAALHEYAEWITDLNQEAGAGDAVLGHWAQVWTLCEALWGRLGSAETEPEPGTSGYLQR
LERRRSFSAWLSHSATQRIEQEVGLNQGGGNVEAIFSYLTGHGISDACRLAQKSGDHRLS
LLLSQAVGSQYGRELLALQLSDWNRMQTDSFLPEERLRIFALLAGKPVWQSTDCVVNVCS
ELDWKRCVAVHLWYVLPPTASIADALAKYEAAFQGSAKGQKYACAPLPPYLDQSDQLDME
EEESKRPLYDICFHLLKLYSDRHYSLQQLLDPLTVTWKRLDYRLSWHLWSVLQALHYTHL
SPARQGLIHTSYAAQLESAGLWDMAIYVLLHIPDNALREHAVREMLQLHCPLLETEESAQ
KEHFLTERLLIPEQWLHQAKATRARRDADRHGEALHLYRAGHWNLCHSLVIQHLASECII
NDNHEYLLEFLEGLAVPECSAVIQDWDTAGRVYLDYIRVMQTLHAIQQMDSVGYELERLH
TEVTSLCSRIELLPCSTAKDRLAQSEMAKRVANILRVVLSLQQGGEGGVIPLSQLAPHIG
RLPMPEDYAVEELRSLTQSYLRQLIVS
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggggctccctttgggggagggactggaggatttgggacttca
tccacatttgggcaacaaaacacaagctttggggcggcaacaggtggcttcggagcctca
gcgtttggggcgaccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcagcaaatccacactggtgcaggtagaggaggtggcctatttggt
tccagtacattcagccagcccgtgacgtcatccaccagtagcggctttggctttggcgcg
tccagcggcacgtccaccagcctgttcggcagcaccaacacgggcggcggaggactcttc
tcccagcagagcaatgccttcggagccgccaaaccagcctcctttggcacgttcggcacg
agcacggccagcagtggggggctgtttgggacgaccaactccaacccctttggaggggcg
tctacctccttgttcggagcatcagggtttacccagcaggctgcccagccaggcaccacc
gttaagttcaaccctccaacaggaagtgacaccatggtgaaagggggtgtgaccgcgagc
atcaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactggag
gagctgaggtttgaggactaccaggcagggaggaagggacccactaaccctatggctgca
ccaacagggggtctctttgggactgcagccgcagccacccccagtacaggggctacaggg
ctgttcggctcctcagccaccaacacaggcttctccttcggccaggccaaaacctccttc
ggaactagtacgggtggctttggtacagccacaggcagtctgtttgggcagcagcagccc
cagcaggcccagcaggcagccagcctgttcaagcccttcggccaggccacaacaaccccc
aacacaggcttctccttcggcaacaccagcaccatgggccagccccaacaaaccagcacc
atggggggtctgtttggggccacggcagcgtcccaggcaggggggttgtttggaaacacc
gctcagaccacaccagctacgggctttgggacgggcaccgggctcttcggacaaaccaac
actgctttcggcaacgtcggcacacagagcttgtttggtaataagacggcagggtttggt
gccaccaccaccagcgccccgtcgtttggcacgggtactggcctcttcggcaacaaaccc
gccctcactctcggaacagctaccaacacatccaactttggttttggacccaccgctgct
ggcggaagcctctttgggaacaagacggcagcaggaggactagggtccgggctgggagcc
ggctttggagcagtaggcactgggccgatgtctctgtttgggaataacaagacgctgggt
tccactctgggaacaatgggagggtttggagtgcagggattcagcacaggaaccaacact
ctaggcttcggagcgccacaacagcccgtcgcgctgatggaccctaacgcggtggcggcc
cagcaggcagtgctgcagcagcagatcaatgctctggcctactcccccttcggagactcc
cccctcttcagaaaccccctctctgaccccaagaagaaggaggagcgtctgaagcccacc
aatccggcggcccagaaggcgttgaccacgccaactcactacaagctgacaccgcggcct
gcgacacgtgtgcggcccaaagctctgacatcatcgggctcctccaagtcccagctgttt
gatgggttggatgatgacgagccttctctcaccaacggagccttcattcccaggaagagc
atcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagcagcccaatcaac
agagactccgacgacctgtcctctccaccagagtaccccctcaacggactcggtgccagt
gtggacgaggatgatgatgtgagggaggtggtggagggaggagccgaggaccacctggag
atcaacaagttctacaccaatcccatagccaagcccatcccccagcccagcctgcaggac
accatctcagagctcaacgcccatagggtgggggctaggggcaggaacgggctggaggtg
agcagcgaggacatatcgctgggagatgactccatacaggaggagcgagaggaagaggtg
cccccccaccctgcaggtatcgttctgggccgtgtgggctactacacaatccccgccatg
gacgagctggccaaaatggtggacgaaaacggagtgtgtgttgtggagaacttcaccgtg
ggcagaaaaggttacggctcagtgttcttccatggtgaggtgaacgtgacggggctgaac
ctggatgagattgttcacttcagacgtaaagaggtcatagtctacctcgacgacaagaac
aagcccgctgagggggaggggctcaacaggcgagcagaggtgactctggatggggtgtgg
cctaatgataagaccacttgtactcagataaagagccctgagcgtctgtctgagattaac
tacgagggccgcctggagaacgcctcacgcaaacagggcgcccgcttcctcgagtaccgc
cccgagaccggctcctgggtgtttgaggtggcccatttctctaagtacggcctgcacgac
tctgacgaggatgaggacgtccctctcaaagtggaccccaagaagctgaagactgccaca
acacttccaccagggctgcagcagctgcctaccttccagcagcaggaggcgccacaagct
cagtccacagcagtgctggagctgctgaatcgtgtgtcggaggtggacagtgatatggct
gacattacccaggatgccccaggcgagagcattttggggggtgaggaaggggagagtgtc
atgggggaggagaagggaagtcggctggggactgtgacccctgtggaacacgactctgtc
tcagcgtccagtcagatcgcctcctcgctggggatcaaccctcacacactacagatcatg
aaggcatccctgtttgctgaggatgatgatgatatgttccaggagcagggagggatgaaa
agttctctagacgtgacctctcctcacatccacctgcctggcacgcagggcaggccctcc
attggtggtctcctgcagactcgtttcagcggtacaggtctcttctttcagcaccatgac
gtgcccttcggtgggggccttcccgggaggcagtccatgtctcgggcgtcgccggcggtg
cctgatccctcgcgggtctccccctggccctccttcctgttgccggccccaacggccgag
gccactgtacggacggtgggggctcgacgcctggggggacctgtggacctagagaactca
gtcacactggggaagggccgtctgctgatggatgcagctttgttcacgggccggtcgttt
cgggtgggctggggtcctggctggactctggtccactgtggagacgggctgagtggggcc
ggggacaaggagcaggaccacggagacacaggagctggaggctttggattcctgcccaaa
cctgccaagagcaaaccactgtcagacagtccgttcaaggtggtgatcgagcaggtggtt
ggtctggagccgcgggacagcgaggagagccaggcggtggaccagcggcccctggagatc
ggcctgaagcacagcagcatcagtacagagggggtctgccccttcatccagccccagagc
ggtgtggcggccctgcacgagtacgcagagtggattactgacttaaaccaggaggctggc
gctggagatgcagtcctgggtcactgggctcaggtgtggactttgtgtgaggccctgtgg
ggccgactgggttcggcagaaactgagccagagcctggtaccagtggctacctgcagcgg
ctggagaggagaaggagcttctcagcctggctgtcccacagcgccacccagaggatcgag
caggaggtgggcttgaaccaggggggaggaaacgtggaggccatcttcagctacctgact
ggacacggcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgtctctct
ctgctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcgctgcagctt
agtgactggaacaggatgcagacagactccttcctgccagaggagaggctacgcatcttt
gcccttctcgctgggaaacctgtgtggcagtctacagactgtgtggtgaacgtgtgttca
gagctggactggaagcgttgtgtggcggtccacctgtggtacgtgctgcctcccactgcc
tccatcgctgacgccctggccaagtacgaggctgccttccagggctctgctaagggtcag
aagtacgcctgcgcccccctgcccccctaccttgaccaatcagaccagctggacatggag
gaggaagagtctaaacggccgctttacgatatctgcttccacctgctcaaactctacagc
gacaggcactacagcctgcagcagttgttggaccccctgacggtgacgtggaagcgtctg
gactaccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacacctc
agccccgcccgacagggcctcatacacaccagctacgctgcccagctggagagtgctggc
ctctgggacatggccatctacgtactgctgcacatacctgacaacgcgctgcgtgagcat
gcggtgagggagatgctgcagctgcactgccccctgctggagacggaggagtctgcccag
aaggagcacttcctcacagagagactactgatcccagaacagtggctccaccaggccaag
gctaccagagccagaagagacgcagacagacacggagaggcacttcacctgtacagagca
ggacactggaacctctgccacagtctggtcatacagcaccttgcctcagagtgtataatt
aatgataaccatgagtacctcttggagttcctggaggggcttgcggttcctgagtgcagt
gctgtgatccaggactgggatacggcaggcagagtctacctggactacatcagagtcatg
cagaccctacacgccatacaacagatggacagtgttggttatgagctggagcgtctacac
actgaggtgacgtctctctgcagcaggatagagctcctcccctgctccaccgccaaggac
cgccttgcccaatcagagatggccaagcgtgtggctaacatcctgcgtgtggtgttgagt
ctgcagcagggtggtgagggtggcgtgatccccttgtcccagctagcgccccacatcggc
cgtctgcccatgcccgaggactatgctgtcgaggagctccgcagcctcacccaatcatac
ctgagacagctcattgtcagctaa
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