Coregonus clupeaformis (lake whitefish): 121579891
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Entry
121579891 CDS
T08357
Name
(RefSeq) protocadherin-1
KO
K16498
protocadherin delta 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
121579891
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cclu01009
]
121579891
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121579891
Protein phosphatases and associated proteins [BR:
cclu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
121579891
Cell adhesion molecules [BR:
cclu04515
]
Cadherins
Protocadherins
121579891
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
PepSY
Fibulin_C
Glyco_hydro_26
NnrU
Motif
Other DBs
NCBI-GeneID:
121579891
NCBI-ProteinID:
XP_041750781
LinkDB
All DBs
Position
13:complement(39172763..39277779)
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AA seq
1190 aa
AA seq
DB search
MELCLGAVLLWVLVLDCCGWVEAGILYRVQEEQPPSTLIGSLASDQGLPDSGHLYKLEVG
APYLRVDGKTGDIFTTEIPMDRETLRDCRSMVRGKPCFLEFEVSVTDLIHNQSPRLIEGR
IEVQDINDNTPQFPSPVLTISVPENTHLGALFSIPLATDRDSERNRVADYALIAGPDAAT
LFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLTIKAVDGGNPQRYSSALLRVVVADAND
NAPKFEKATYEAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQALDPVPKLLRIDRS
TGIIYVKGPLDREEISDLTFYVVARDKGPQPKSSKTFVTIQVTDQNDNSPAVEIRGIGLV
THSDGVANISEDMPVGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASDSSTNKRKY
FLQTTTPLDYERVREYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPVFSPALFEVAFA
EENQPGDKVVDVVATDADSGTNAELVYSIVADTSTRGLFEIDPVSGEVRARSPLDREHKE
RYEFRVTASDKGSPSHRGTATVVVKVLDRNDNDPKFMLSGYSFSVLENMPPLSAVGMVTV
LDMDQGENARVQLSVDPDGGKFVIQNGTGTILSSISFDREKESSYTFRLKAVDGGEPPRS
SYVGVTINVLDENDNDPVVTKPSNSSFRLLSPLAAPDSRVELVEAEDLDTGPNAELVFSI
TGGNPYELFSISSTTGEITLAKELTQKHGGLHRLVVRVSDEGKPARHATAMVHIYVNETI
ANVSLVEALVGHSLYTPLETDIAGDPDHSLAAQRSNIVYGSLAGVAGVVMVIIVVVFIRH
RIQRETKSGYQAGKKETKDLYAPKQGPKNGKGKRGRKGKPSKAPKPLGEEEEVSLQKSLK
FNLDGVNDSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHQAVQDLPAT
NTFVGTGGDDNSTGSDQYSDYSYKASQPKYNSKQLPHRRVTFSTANPVQDLQDASQHSYY
DSGLEESETPSSKSSSGPRIGPLTLPEDHYERTTPDGSIGEMEHPENDMRSIPDVAMTGN
CTQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGGEEHR
AHLPPSRSAYSNSGHAPSQDFPLEEVPLSVATEFPSTSPPSHTPKREIYL
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atggaactgtgcttgggagcagttctgttgtgggtcctggtgttggactgctgtggttgg
gttgaggctggtatcctctaccgggtccaggaggagcagccccccagcacgctgataggc
agcctggcatcagaccagggcctgccagactctggtcacctgtacaagctggaggtgggc
gctccgtacctgcgtgtggatgggaagacaggggacatcttcaccacagagatccccatg
gacagggagacactgagggactgccgcagtatggtcaggggcaagccctgcttcctggag
tttgaagtgtctgtcacagacctaatccacaaccagagccccaggctcatcgagggccga
atcgaggtccaggacatcaatgacaacacgccgcagttcccctcccccgtgctcaccatc
tctgtcccagaaaacacccacttgggagcgctgttctccatccccctggccacagacagg
gactcggagaggaacagggtggcggactacgccctcatcgctgggccagatgcagcgacg
ctcttcggcctgcaggtggcggaagacaggggggagaagctgccccagctcatcgtcctg
ggcagtctggaccgggagctcaaggactcgtacgacctgacaatcaaagctgtggatgga
ggtaacccccagcgctatagcagtgccttgctgagagtggtggttgctgatgctaacgac
aatgctccgaagtttgagaaggccacgtacgaggctgaggtttcagaaaacagccctgtg
ggacactctgttttgcaggtaaaagccaatgactctgacatgggccccaatggagagata
gaatatacactacaccaggcattagacccagtgccaaaactcctgcgaattgatcgctcc
actggcatcatctatgtcaaagggcccttggatcgggaggaaatcagcgatttgacattc
tacgtagtggccagggacaagggtccccaacccaaaagctccaagacctttgttacaatc
caggtgactgaccagaacgacaattcccctgctgtagagatccgtgggatcggcctggtg
acccacagtgacggggtggcgaacatatcagaggacatgcccgtgggcacagcggtggcc
ctcgtccaggtgtctgacagggacgagggggagaatgcagtggtcacctgtgtggtggcg
ggggacgtacccttccagctgcgcccggctagtgactcgtccactaacaagaggaagtac
tttctgcagactacaacccccttggactatgagagggtcagggaataccgtgtggagatt
gtggctgttgactctggcaacccagctctctccagtactaactcattgaaggtgcaggtg
actgatgttaacgacaactccccagtgttttccccggccctgtttgaggttgcctttgca
gaggagaaccagccaggggacaaggttgtggatgtggttgccacggacgctgatagcggc
actaacgcagagctggtctacagcatcgtagcagacacatctaccaggggcctgtttgag
attgaccccgtttcaggggaggtaagggcacggagcccactggacagagagcataaagaa
cgctatgagttccgggtcaccgcgtccgataaaggctcccccagtcacagaggaacagcc
acggttgtggtcaaagtgctggaccgtaatgacaacgaccccaagttcatgctgagtggc
tacagcttctctgttctggagaacatgcccccactcagcgccgttggcatggtgactgtg
ctggacatggatcagggagagaacgccagagtgcagctctctgtggatccggacggaggg
aagtttgtgattcagaatggaacaggaaccatcctgtccagcatctcctttgaccgggag
aaggagagcagctacaccttccgtctgaaggccgtggacgggggagagcctcccaggtcc
tcctatgtaggcgttaccatcaatgtcctggatgaaaacgacaatgatcctgtggtcacc
aagccctccaactcctccttcagactcctgtcccctctagctgccccagacagccgtgtg
gagctagtggaggctgaagacctggacactgggcccaatgcagagctggtcttcagcatc
actggaggaaacccttatgaactcttcagcatctcctccactactggggagatcaccctg
gccaaggagctgacgcagaaacatggtgggctccatcgcctggtggtgagggtgagtgac
gagggcaagcccgcacgccacgccactgccatggtgcacatctatgtcaacgagaccatc
gctaatgtcagcctggtggaagcgctggtgggacacagtctctacacccctctggagaca
gacatcgctggtgacccagaccacagcctggcggcccagcgcagtaacattgtgtacgga
agcctggcaggagtggcgggcgttgtcatggtgatcatagtggtggtgtttatccgccac
cgcattcagagggaaacgaagagcggctatcaggctggcaagaaggagaccaaggacctt
tacgcccccaagcagggaccaaagaacggcaaaggcaagaggggcaggaaaggaaagccc
tccaaggcccccaagcccttgggagaagaggaggaggtcagcctccagaagagtctcaag
ttcaacctggatggggtcaatgacagccccaggatccacctgcccctgacatacccccca
ggcagccctgaccttggcagacactaccgctccaactctcccctgccatccatccagctg
caggcccagtccccctcggcctcccagaagcatcaggcggtccaggacctccctgccacc
aacaccttcgtagggactggaggagacgacaactcaacaggctcagaccagtactcggat
tatagctacaaggccagccagccaaagtacaacagcaagcagctcccccatcgcagagtg
acattctccacagccaatcctgtacaggatcttcaggatgcatctcagcacagttactat
gacagtggcctggaggaatcagagacgcccagcagtaagtcatcgtcaggcccccgcatc
gggccactgaccctgcctgaggaccactacgagaggaccaccccggacggcagcatcggg
gaaatggagcaccctgaaaacgatatgcgatccattcctgatgtggccatgacggggaac
tgtactcaggagtgcagcgagctgggccactcagacgcctgctggatgcctgggcagccc
tccccagtgcgcaagaccaggaacccccccaaactctccaccttcgtgccttaccaggag
agagggagcctgggccgcttggccaacgggagcgccaggctgggtggagaggagcaccga
gcccaccttccgccctcccgcagtgcctattccaacagcggccacgccccaagtcaggac
ttccccctggaggaggtgcccctgagcgtggccaccgagttcccgtccacctcccctcct
agccacacccccaaacgagagatctacctgtga
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