Coregonus clupeaformis (lake whitefish): 121579894
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Entry
121579894 CDS
T08357
Name
(RefSeq) roundabout homolog 1-like isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
121579894
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
cclu04515
]
121579894
Cell adhesion molecules [BR:
cclu04515
]
Immunoglobulin superfamily
ROBO family
121579894
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
Ig_VEGFR-1-like_5th
C2-set_2
FN3_DSCAM-DSCAML_C
Pur_ac_phosph_N
Unc5_NetrinR_N
Ig_PDGFR_d4
Fn3_Dep-1_3rd
Fn3_SaeA_3rd
Ig_J_second
Anophelin
Motif
Other DBs
NCBI-GeneID:
121579894
NCBI-ProteinID:
XP_041750790
LinkDB
All DBs
Position
13:38411097..38678240
Genome browser
AA seq
1687 aa
AA seq
DB search
MRVMWSVVTALLVAMLLSIVQSELQEGALVPDTDTQDRANEDATPTPSSEHEDDNSLGYT
GSRLRQDDSPPRIVEHPSDLIVSKGEPATLNCKAEGRPAPTVEWYKDGERVETDRDNSRS
HRMLLPSGSLFFLRIVHGRRSKPDDGSYVCVARNYLGQAVSHNASLEVAILRDDFRQNPA
DVIVAAGEPAVLECQPPRGHPEPTISWRKDGTNINDRDERITIRSGKLMITNARKSDAGK
YICVGTNMVGERESEIAELTVLERPGFVKRPSSIMVLADESVEFHCEARGDPVPTVRWRK
EDADLPKGRYEILEDHTLSVRGVTPSDEGSYTCVVENMVGKAEASATLTVHVFTVPPAFA
MRPRNQVVAVGRMVTFQCEATGNPQPAIFWQREGSNSLLFSYQPPQPFSRLSVSQTGSLT
IADAQRSDAGYYSCQALNIAGSVITKALLEVTDMVSERPPPVIRQGPANQTVPVDSTVVL
GCIATGTPTPTVHWKKDGVVVSPEDSRITQIDTGALQIRYTKLGDTGVYTCLASSPSGEA
SWRAYVEVEEFGMVVQPGRPTDPNLIPSAPSKPDVTDVSRTSVTLSWKPNPNAGATPTSY
VIEAFSHASGSSWVTLADHVKTETFVLKNLKPGAVYLFLVRAANAYGLSDPSPITDAVRT
QDTPPTSQGVDHRQIQRELGDVVVNLHNPTILSSSSVRVQWTVEQQSPYIQGYKVMYRAS
AELGQPGGQWGVFEVRTPGEDGAVVPQLKKGVTYEFKVRPFFDEFQGADSEVKVARTLEE
APSGAPRGITVTKSDANGTAILVTWQPPSEEEQNGMVQEYKIWCLGNESRYHINRTVDGS
TFSVLIPSLVPGIRYSVEVAASNAAGPGVKSDVTFFQLDSKGQMMDSPEDQDTLSQISDV
VKQPAFIAGIGATCWVVLMVFSVWLYRHRKKRSGLSSSYAGIRKVPSFTFTPTVAYQRGG
ESVCSAGRPGLLNMGESVNQPWLADSWPNACANHKDCNINCCNSGNGTSDSNMTTYSRPA
DCIANYGSQLEKQQGGLLGPEQAVYSDVDLSNKLNELKTFNNPSLCYMGPGGGPPTPYEP
TPYATTQLIQSSILNKAAAAGAGAPDIRCWNQPPSQLQKAHMQYNIMEQNNRLNKDHYRG
DGPLQGTIPYNQAHEHSTGGSHHSSDRGSNSTSGSQSHKKGTRTPKLPKTNTVNWGEPLP
PPPANPPPSRSCDEYTLHMEKSFNPDAPCPMLTSRMYLHPDEMEEEEQEADEGMDRCPTP
PVRGAASSPAGMSYSHHSTATLTPSPQGDQHNSLHNGTDHHRQHAASPPPPPRPLSPPHT
YGYISSPLALDTDGQEEEEEEEEDEEEEEAADETDAEMAQGHYHQHQNNPQPHQKQPHHQ
HHPPPRRLHLRGLEQTPASSTGDLESSVTGSMINGWGSASEEDNGSSGRSSAISSSDGSF
FTDADFAQAVANTGDYTAGLRMARFPEDTGPAGRRHHRPSSPLSTDSNMSSAVMQKRPPK
RHKQHQAQAGHQQRNDFTDDSCMPLKSPSHMSRCGYEVRGATLPRIGSGEGRGRRGSAGG
QRTREGSVERREAQDKNRTPQGGQRTREGSVERLEAQDKNRTPQGGKGSSKARQHPGSED
ILPYSRPSFPSVQGQSQAQSSSSSMSSRGSGGRRRDGAPGARRNPTDTLPSIAGFQTQEE
ELELLES
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atgcgggtcatgtggtcagttgttacggctctccttgtcgccatgctgctcagtatcgtc
caatcagagctgcaggaaggagccctcgttccagatacagacacacaggatagggccaat
gaagatgccaccccaaccccctcgtctgaacatgaagatgacaactctctgggctataca
ggatctcgtcttcgtcaggatgactccccaccccgaatcgtggagcacccctctgacctc
atcgtttccaagggggagccggccaccctcaactgcaaggcggaggggcgtcctgcccct
acggtggagtggtacaaggatggggagcgtgtggaaacagaccgggacaactcccgttcc
caccgcatgctgctgcccagcggctccctcttcttcctgcgcatcgtccacggccgacgc
agcaagccagacgacggaagctatgtgtgtgtggcccgtaactacctgggccaggccgtc
agccataacgcctcgctggaggtagccattctccgtgatgacttcagacagaacccagcg
gatgtgattgtggcagcgggcgagcctgctgtgctggagtgccaaccgccccgcgggcat
cctgagcccaccatctcatggaggaaagatggtaccaacatcaatgaccgagatgagcgc
atcacgatccgcagtgggaagctgatgatcaccaacgccaggaaaagtgacgcagggaaa
tatatctgtgtggggaccaacatggtgggagagagggagagcgagattgccgaactgact
gtactagagcgcccagggtttgtgaagaggcccagtagtattatggtgctggcagatgag
agtgtggagttccactgtgaggcgcggggagatccggtccccactgtccgctggaggaaa
gaggacgcagacctgcctaaggggaggtatgagatcctggaggaccacactctgagtgtg
cgtggtgtaacaccatcagacgagggctcctacacgtgtgttgtagagaacatggtggga
aaggcagaggcgtccgctacactgaccgtacacgtcttcactgtgcccccagcgttcgcc
atgcgccccagaaaccaggtggtagcagttgggagaatggtcaccttccagtgtgaagcc
actggcaaccctcagcctgctatcttctggcagagggagggcagcaatagcctgcttttc
tcctaccagccccctcagcccttcagccgactttccgtgtctcagacaggcagtctgacc
atcgcagacgcccagcgctctgacgctggctactacagctgtcaggccctcaacatcgct
ggctccgtcatcaccaaggccctgctggaggtcactgacatggtgtcagaacgcccccct
cccgtgatccgacagggcccagccaatcagacggtacctgtggacagcacagtggtcctg
ggttgcatagcaacaggaacccccactccaacagtccactggaagaaagacggggtggtg
gtgtcccccgaggactcccgcatcacccagatagacacaggagccctgcagatccgctac
actaagcttggagatacaggtgtatacacctgtttggcgtccagccccagtggagaggca
tcctggagggcctacgtggaggtggaagagtttggaatggtggtccagccgggtcgaccc
acagaccctaacctgatccccagtgccccgtccaagcctgacgtgactgacgtcagccgc
acctctgtcacactgtcctggaaacccaaccctaacgctggggccacgcccacttcctat
gttatcgaggcattcagtcacgcgtcggggagtagctgggtgactctggctgaccacgtg
aagacagagacctttgtcctgaagaacctcaagccaggtgcagtctacctgttcctggtg
agagcagccaacgcctacggcctcagtgaccccagccctatcactgatgctgtcagaaca
caagacacccctcccacaagccaaggagtggaccaccgtcagatccagagggagctaggg
gacgtggtggtcaatctgcacaaccccaccatcctctcctcctcctccgtcagggtgcag
tggacagtggagcagcagtctccgtacatacagggttataaggtgatgtacagggcgtct
gctgagctgggccagccaggggggcagtggggcgtgttcgaggtgcggacccctggagag
gacggtgctgtggtgcctcagctgaagaaaggggtcacctacgagttcaaagtgcgtccc
ttctttgatgagtttcagggagcggacagcgaggttaaggtggccaggacgctggaggaa
gcccccagtggagccccccggggcattaccgtgacgaagagcgatgccaatgggaccgcc
atcctggtcacctggcaaccaccttccgaagaggaacagaacggaatggtacaggagtac
aagatctggtgcctgggcaacgagagccgttaccacataaaccggacagtagatggctcc
accttctccgtgctgatccccagccttgtgccagggatacgctacagcgtggaggtcgcc
gctagcaatgccgccggcccaggggtcaagagcgatgtcaccttctttcaacttgactct
aagggtcagatgatggacagtcctgaggaccaggacacactatctcagatctcagacgtg
gtcaagcagccggcgttcatagcgggcatcggtgccacctgctgggtggtcctcatggtg
ttcagtgtgtggctttaccgccaccgcaagaagaggagcggccttagcagcagctacgcc
ggtatacgtaaagttccatcattcaccttcactcccacggtggcctatcagagaggagga
gagtctgtctgcagtgctgggagacctgggctgctgaacatgggggagagtgtgaaccag
ccgtggctggcagactcctggccgaacgcctgtgccaaccacaaagactgcaacatcaat
tgctgcaacagtggcaacggcaccagcgacagcaacatgaccacctacagccgcccagcc
gactgcatcgccaactatggcagccagctggagaagcagcaggggggtctactggggcct
gagcaggctgtgtacagcgacgtggacctctccaacaaacttaacgagctcaagactttc
aacaaccccagcctgtgctacatgggcccagggggagggccgcccaccccctacgagccc
accccctacgccaccacccagcttatccagtccagcatcctgaacaaggctgcagcagct
ggggccggagcccctgacatacgctgttggaaccagcccccctcccagctgcagaaagca
catatgcagtataacatcatggagcagaacaacaggcttaataaagaccactatagagga
gatgggcccctgcaaggcaccatcccctataaccaggcccatgaacacagcacaggaggc
tcccaccacagctctgacaggggcagcaacagtacctctgggagccaaagtcataagaag
ggaactcgcacccccaaactgcccaaaactaacacagtgaactggggtgaacctctgccc
cctccccctgccaaccccccaccaagccggagctgtgatgagtataccctgcacatggaa
aaaagctttaacccagatgccccatgcccaatgcttacctcacggatgtacctgcatccg
gatgagatggaggaggaagagcaggaggcggacgagggtatggataggtgtcccactccc
cctgtcagaggggcagcctcttcccctgcgggtatgtcctacagtcaccactctacagcc
actctcaccccctcaccccaaggagaccagcacaacagcctacacaacggaacagaccac
cacagacaacacgcagccagcccaccccctcccccgcgccccctctcccctccacacacc
tacggctacatctccagccccctggcactggatactgatgggcaggaggaagaggaggag
gaggaggaggatgaagaagaagaagaggcagcggatgagacggatgcggagatggcccag
ggtcactaccaccagcaccaaaataacccccagccccaccagaaacagccccaccaccag
caccaccctcccccacgcaggctgcacctccgggggctggagcagacgccggcctccagc
actggggacctggagagctccgtgacgggctccatgatcaacggctggggctcggcctcc
gaggaggacaacggctcgtcaggacgctccagtgccatcagctcctcagacggatccttc
ttcacagatgcagacttcgcccaggctgtggcaaacactggggactacacagcaggccta
cgcatggccaggttcccagaggacacagggccagcagggcgaaggcaccatcgtcccagc
agccccctgtccacagacagcaacatgagctctgcagtgatgcagaagagaccgcccaag
aggcacaagcagcaccaggcccaggctggccaccagcagaggaacgacttcactgatgac
tcctgtatgcccttgaagtctcctagtcacatgtcgcggtgtggctatgaggtgaggggg
gccacgctccctaggattggctctggggagggtcggggccggagagggagtgcagggggc
cagaggaccagagagggctctgtggagagacgggaagcccaggacaagaacaggactcca
cagggaggccagaggaccagagagggctctgtggagagactggaggcccaggacaagaac
aggactccacagggaggcaaggggagcagcaaagcccgtcaacacccaggttctgaagac
atcctcccgtacagcaggccctcgttcccctcggtgcagggccagagccaggctcagagc
tcctccagctccatgtcctcccggggctcagggggccggaggagagatggggcccccggg
gcccgtaggaaccccacagacacgctgcccagcatcgcaggcttccagacccaggaagag
gaactagagctgctggagagctga
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integrated database retrieval system
