Coregonus clupeaformis (lake whitefish): 121579957
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Entry
121579957 CDS
T08357
Name
(RefSeq) transcriptional regulator ATRX isoform X1
KO
K10779
transcriptional regulator ATRX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu04110
Cell cycle
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
121579957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121579957
03036 Chromosome and associated proteins [BR:
cclu03036
]
121579957
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Zinc finger
Cys4 GATA-factors
121579957
Chromosome and associated proteins [BR:
cclu03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121579957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
ATRX_C
ADD_ATRX
Helicase_C
C5HCH
Vps8_C_schizo
Motif
Other DBs
NCBI-GeneID:
121579957
NCBI-ProteinID:
XP_041750908
LinkDB
All DBs
Position
13:56777249..56832604
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AA seq
1972 aa
AA seq
DB search
MSSIPPGTSKLNVLVTKLHEFLTHAPEEDDDTLVTESPDGITNKDCVEPHSTDRTSLEPQ
QTLTDALKQYGCGSRRKPSVVIKHSGLDESGASNESDDDCLIINSNGYPDVTRLPKGTVL
VRPEPVENVRDDFRGPEFHCGKSGNLRRVFSRRRGGGHLEIVSCTACGQQVNHFQRDSFY
QHPVLKVLICKSCFKYYSSDDISKDCDGMDEQCRWCAEGGNLICCDFCPNAFCKKCILRN
LGRKELSGILDEESKWYCYVCSPEPLLDLVVACDNVLDNLGSLWQDHRKRGRGEGKSGHY
DSHPRHSQNIPVGHWNHSGMDGHVVFNYNTLQIPEEMAKKAKNLVDSTNTVNTTFMKFIQ
GGMQLKRQYLKTFQSVLKGLKKSHTALEEALLEEFNEMGLPNDGENPTFYDTDASQQAQE
GCVEMDIADKNCLHYLKKIAAEHLEENDSDSKGFTDDERPSSSSEMKGVLGTEIMPRRGR
GRPRKNSKPGEDPSNVTKQLVVQLTPVPVEKEPLSGPPELEVELEEEKELEEEEIKEKVD
EREGDCESIEPATEEEYESAEEGSESLVLELEEEPENRRSPRVKTTPLRRPGEGKTKPTP
SGPDSEGESDPDTSPNVEVPQGADEGGLGRGIEDSDSDEVPAVLQRAAMARSSDEAGSDD
GDHRSVTKKCLFGLKKNTPLSPERVVRKRKVQDRSSDSSSDDPDLQKEIKTMSRPRGRPR
KVKRDAEPTPSKDSPQHRPLGRPRKVKKEDESSSSKEGSTQVTKPKSTPRSQQRTKQTPS
SSSQEEGYQDSESSDDSGDQKIKPITEEVALLGAAAFHQSSGDEEQPRSGPSWAAEDDDD
PENRIAKKMLLAQIKANYSSGEDFSSDEESSQDDESDRGEKAQEDGKDESSDENGETSSL
TSDSESSKTRHRHSLLRHKLSLDDGNPNGRKTAKENGNEQKVKKSRRTEGETLDSQSSAD
NSQSEQEESGMSEELSQSENEGNEQKPKSSSTSRVERESVRSYLQKKQQPSYIVLSDSSV
DKSDDEEKDGEEGDNKGTPKGRKKIRRIIVDEHLRSETQRALKEEEERRRRLAEREQRED
FREVIVIDDEMSKVACPITTKLVLDQDEGTREPLIQVHRNLVTRLKPHQVDGVQFIWDCC
CESVKKANSTPGSGCLLAHCMGLGKTLQVVTFLHTMLQSRCLKFRTALVVCPLNTILNWV
NEFDKWQVDMGADKVKVTELATLKRPQERYIALQRWQKDGGVMIMGYEMYRNLTLGLKVT
HRKFKKTFDSALVNPGPDFVICDEGHILKNEASNISKAMSAIKTKRRVVLTGTPLQNNLN
EYHCMVNFIKENLLGSIKEFRNRFINPIQNGQCADSTPRDVRIMKNRAHVLHAMLAGCVQ
RRDYSALTKFLPPKHEYVMAVRVTPLQYRLYRYYLDNFTGAGSVVEGARGKAGTSLFKDF
QILSRIWTHPWCLQLNYISKENKGHFDGKHQGKAESKEKENKGQLRNADEKSNDVDVILV
WNSTSKGVNVEGDQRAGPLVPVVEAVRASTSFRPDSPAADWYKDMLSDSDATILGHSGKM
VLLFEILGMAEELDDKLLVFSQSLISLDMIEDFLDLANKAKNNGQSSLYKGDGSWIRNTD
YYRIDGSTSATSRKKWAEEFNDATNERGRLFLISTRAGSLGINLVAANRVIIFDASWNPS
YDIQSIFRVYRFGQLKAVFVYRFLAQGTMEEKIYDRQVAKQSLSFRVVDQQQIQRHFTLF
ELTELYMFEPDLLDDPNSEKKSKRTTPLLPKDMVLAELLQSCKEQIVCYHEHESLLDHKE
EEELSEADRKAAWAEYEAEGAFILNNAEHSSTNVPSPSTSRMANNSLSSLYKKTNEQLKN
MINASRDKVSEAIKSLHSLKNLSLDDYVLRLWQGNPSLDEKQVRALAQTWKTSNDLERER
RQAIYHDLLAKQQSLTMCIQTILTSRKTEVTQTATVTNQTPALTDLVKKPMQ
NT seq
5919 nt
NT seq
+upstream
nt +downstream
nt
atgtccagcattcctcctggcacgagcaagctcaatgtgttggtgaccaaactgcatgag
ttcttgactcatgctccagaagaagatgatgacacactggtgactgaaagtcctgatggt
ataacaaacaaggactgtgtggagccacactcaacagaccgaacctctcttgagcctcaa
cagacattaacagatgccttgaagcagtacggatgtggttccaggagaaaaccttcagtt
gtaattaaacacagtggactggatgaatctggtgcttcaaatgaaagtgatgatgactgc
ttgatcatcaattcaaacggttatcctgatgtaacaagattaccgaaaggcactgtactg
gtgaggcctgagccggtggaaaatgtcagagatgacttcagaggtccagaattccattgc
ggaaaatctggtaatctgaggagagttttttccaggagacgtggaggaggacacttggag
attgttagctgtacagcctgtggccagcaagttaaccacttccagagggactccttctat
cagcatccagtactcaaagtactaatttgcaagtcttgtttcaagtattactcaagtgat
gacatcagcaaggattgtgatggcatggacgaacagtgcagatggtgtgcagagggggga
aacctgatctgctgcgacttttgccccaacgccttctgtaagaaatgcattttgcgtaac
ctggggcgaaaggagctgtctggcatcctggatgaggagagtaagtggtactgctacgta
tgcagcccagagcctcttctggacctggtcgtcgcctgtgacaacgtccttgacaacctg
gggagtttgtggcaagaccaccgcaagaggggcagaggcgagggcaaatctggacattat
gactcccatcccaggcattctcaaaacattcccgtgggtcattggaaccatagtggcatg
gatggtcatgtggtgttcaactacaacacccttcaaattccagaggagatggccaaaaag
gcaaaaaaccttgtggactctacaaacactgtaaacacaactttcatgaagttcattcaa
ggtggaatgcagttaaagcgacaatacctgaagactttccagtcagtactgaagggtcta
aagaagtcccacacagctctggaggaagcccttttggaggagttcaatgagatgggtctg
ccaaatgatggggaaaaccccacgttttatgacactgatgcaagtcaacaagcacaagag
ggttgcgtggaaatggacattgctgataaaaattgcctgcattacttaaagaaaattgcc
gctgaacatttggaagagaatgattcagactctaagggctttacagacgatgaaaggcct
tcatcctcaagtgaaatgaaaggtgtccttggcacagagataatgccccgtcgaggtaga
ggcaggccgcggaaaaactccaagcccggagaagatccttccaacgtgacaaaacaactg
gtggtgcaacttacacctgtccctgttgaaaaagagccactctctggccccccagagttg
gaagtggagttggaggaggaaaaggagttggaggaggaagaaatcaaagagaaagtggat
gaacgggagggagactgtgaatctattgaacctgcaacagaagaggagtatgaatctgct
gaggagggaagcgaatctctggtgctggaactggaagaggaaccagagaatagacgctca
cctcgggtaaagaccacgcccttacgcaggccaggtgagggcaagaccaagcctaccccc
tcaggccctgacagcgagggtgaatcagaccctgacaccagccccaatgttgaagtgcct
caaggagctgacgagggagggcttgggagaggaattgaagactctgactccgatgaggtc
cctgctgtccttcagcgggcggccatggctcgcagttcagacgaagccgggagtgacgat
ggagaccatcggagcgtgaccaagaaatgcctcttcggcctgaagaagaacacgcccctc
tctccagaaagagtggtccgcaaacgcaaggtgcaagaccgctcctctgactcctccagt
gacgatccagacctgcagaaggagatcaagactatgagcaggcccagggggaggcctcgg
aaggttaagagagatgctgaacctacccccagcaaggatagtccgcaacataggcccctg
ggcagacctcggaaggtcaagaaagaggatgaatcttcatccagcaaggagggtagtacc
caggtaaccaagcctaaaagcacacctcggtcccagcagagaacaaagcagacgccatcc
tcttccagtcaagaagagggctaccaggattctgaatctagcgacgacagtggtgaccag
aagatcaagcccatcactgaggaggtggccttactgggggcagcagctttccaccagtcg
tctggcgatgaagagcagccccggtctgggccttcttgggcagcagaagatgatgacgat
ccagaaaatagaatcgctaagaaaatgcttttggcccaaatcaaagccaactactcatcg
ggggaggatttctcttcagacgaggagtcatcacaggatgatgaatctgacaggggagag
aaggcacaggaagatgggaaagatgaaagctcagatgagaatggggagacctccagtttg
acctctgactccgagtccagtaaaactcgtcacagacacagtctgctacgccacaagctc
agccttgacgatggaaatccaaatggtcggaaaacagctaaagaaaatgggaatgagcag
aaagtcaagaagtctagaagaaccgaaggtgagacattggatagccagagtagtgctgat
aatagccaatcagagcaggaagagtctggtatgagtgaagagctgagccaatcagagaat
gagggcaatgaacagaagcccaaaagctcatctacctctagagtcgagagggaatcagtc
cgtagttatctacagaagaagcagcaaccctcatatattgtgctgtctgactccagtgtc
gataagagtgatgatgaagagaaggacggagaggaaggcgacaacaaaggtacacctaag
ggccgcaagaagatccgcaggatcattgtagatgagcacctccgctcagagactcagaga
gccctgaaggaggaggaggagagacgcagacgcctggcagaaagagagcagagggaggac
ttcagagaggtgattgttattgatgacgagatgtctaaagtggcatgtcccatcaccact
aagctcgtcttggatcaggatgaggggaccagggagccactcatccaggtgcacaggaac
ctggtgaccaggctcaagcctcaccaggtggatggtgtccagtttatctgggactgttgt
tgtgagtctgtgaagaaggccaattcaacccctggatcaggctgcttactggcccactgc
atgggcctagggaagacactgcaggtggtgacatttctccacacgatgctgcagtcaagg
tgcctgaagttcaggactgccctggtggtgtgtccactcaacactatcctcaactgggtc
aacgagtttgacaagtggcaagttgacatgggagccgacaaagtcaaggtgacagagttg
gccacactgaagcgacctcaggagcgttatattgccctgcagagatggcagaaggatggt
ggtgttatgatcatgggctatgagatgtaccgcaacctcacactaggcctcaaagtcacc
cacagaaaattcaaaaagacctttgacagcgcactggtcaatccaggtccagactttgtg
atctgcgacgaggggcacatccttaagaacgaggcttccaacatctccaaagctatgagt
gccattaagaccaaacggagagtggtgctgacaggcactccactgcagaacaacctcaat
gagtaccactgcatggtgaacttcatcaaggagaaccttctgggctcaatcaaggagttc
cggaatcgctttatcaaccccattcagaatggccagtgtgcagactccacccccagagac
gtccgcatcatgaagaatcgcgcccatgtccttcatgcaatgttggcgggatgtgtacag
agaagagactactcagccttgaccaagttcctgcctcctaaacatgagtatgttatggcg
gtgagggtgacccccctccagtacagactgtatcgctactacctggacaacttcactgga
gcaggatccgtagttgagggagccaggggcaaggccggaaccagcctctttaaggacttc
cagatactcagccgaatctggacgcatccctggtgtctgcagctcaactatatcagtaaa
gaaaataagggccattttgatggaaagcaccaggggaaagctgagagtaaagagaaggag
aacaagggacaattgcggaatgctgatgaaaaaagcaatgatgtggacgtgatcctggtg
tggaacagcacatcaaagggtgtcaatgtggaaggagaccagcgagcaggtccactggtt
ccagtggtagaagcggtgagagcgtccaccagtttcaggcctgacagtccggctgcagac
tggtacaaggatatgctgagtgactctgatgccaccatcctgggacactcagggaagatg
gtgctgctgtttgagattctcggaatggcagaggaactggacgacaaactgttggtattc
agtcaatccttgatctcattagacatgattgaagatttcttggacctcgctaacaaagcc
aaaaacaacggacaatcatccctatacaaaggtgatggcagctggatcagaaacactgac
tattaccgtattgatgggtccaccagcgccacatccaggaagaaatgggctgaagagttc
aatgatgccaccaatgagcgaggtcgtctgtttctcatctcgacaagagctgggtccctt
gggattaatctggtagcagctaacagggtcataatttttgacgcttcatggaacccctcc
tacgacatccagagcatcttcagggtgtaccgttttggacagctaaaggctgtgtttgtc
taccgcttcttggctcagggcaccatggaggagaagatctacgaccggcaggtggccaag
cagtctctgtcgttccgggtggtggaccagcagcagatacagagacacttcactctgttt
gaactgacggagctttacatgtttgagccagacctgctggatgaccccaactctgagaag
aagagcaagaggaccacacccctgctgcccaaggacatggtcctggcagagctgctgcag
agctgtaaggagcagattgtctgctaccacgaacacgagtccctgctggaccacaaagag
gaggaggagctcagtgaggccgaccgcaaagctgcctgggctgagtatgaggcagagggt
gcattcatcttgaacaatgcagaacacagcagcaccaacgttcccagcccctccacctct
cgtatggccaacaacagtctgtcatccctgtacaagaagactaatgagcagctgaagaac
atgattaatgccagccgtgacaaggtcagcgaggccatcaagtccctgcattccttaaag
aacctctccctggatgactatgtgttgcgcttgtggcaaggtaacccaagtctagatgag
aagcaggttagagccctggcccagacctggaaaaccagcaatgacctagagcgggagcga
agacaggccatatatcatgaccttctcgcaaaacaacaatcactcacaatgtgcatccag
accattttgaccagtagaaaaactgaagtgacacagactgccacggtcaccaatcagaca
ccagccttgacagacttggttaagaaacccatgcagtga
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integrated database retrieval system
