Coregonus clupeaformis (lake whitefish): 121580491
Help
Entry
121580491 CDS
T08357
Symbol
irx3a
Name
(RefSeq) iroquois-class homeodomain protein IRX-3a isoform X1
KO
K24889
iroquois-class homeodomain protein IRX
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cclu03000
]
121580491 (irx3a)
Transcription factors [BR:
cclu03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain TALE
121580491 (irx3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeobox_KN
Homeodomain
MRP-S32
Motif
Other DBs
NCBI-GeneID:
121580491
NCBI-ProteinID:
XP_041751357
LinkDB
All DBs
Position
32:1264669..1268102
Genome browser
AA seq
463 aa
AA seq
DB search
MSFPQLGYQYIRPIYPPERQGISNARAGTELSPSGALSNVLSTMYGSPFAAAAQGYGAFL
PYSNDISIFNQLGAQYELKDSPGVQGHPGFAHHHPAFYPYGQYQFGDPSRPKNATRESTS
TLKAWLSEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWTPRSRTD
EEGNVYNSDHEEGEEGDKREDEEEIDLENIDTENIENKDDLDDQDDLHADLKLDGRSDSE
ISDGYEDLQGPDQRFLKAVVKEGKDINVERGEHFHHHHHHSFEIKASQPNGEQLKLNPVS
INSPPSENNAAPAPAQKPKIWSLAETATTPDNPRKSPQMNGSNTVGPGAQTIISPHHRLI
SCPVGKIQNWTNRAFSAHQLALLNSNHYLGLANQASANGLALYSRQQHQHTQDKSHSSDT
AVTERSSALEAEKKLLKTAFHPVHRRPQNQLEAAMVLSALASS
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcccgcagctgggatatcagtacatccgaccgatatacccaccggagcgccag
ggtatcagcaatgccagagccggtacggagttgagcccgtccggggcactctcaaacgtt
ctctcaactatgtatggatcacctttcgccgcagcagcacagggctatggagcatttctg
ccctattcaaacgatatatcaattttcaatcaattgggtgctcagtatgagttgaaagac
agtccaggcgtccaaggacatccaggatttgcccaccatcacccagcgttttacccatat
ggccagtatcagtttggtgacccgtccagacccaaaaatgcgaccagggagagcacgagc
acactgaaggcctggctgagcgagcatcgtaagaacccctaccccaccaagggcgagaaa
atcatgctggccatcatcaccaaaatgaccctcacccaagtgtccacctggttcgccaat
gccaggaggaggctaaagaaggagaacaagatgacctggactccccggagccgcacagac
gaagagggaaatgtttacaacagtgatcacgaggagggagaggaaggggacaagagggag
gatgaggaagagatcgatttagaaaatatcgacacggaaaatatcgagaataaggacgac
ttggatgatcaggatgacctacacgctgatttaaaattagatggtagaagcgactctgag
atttcagacggctatgaggatttacaagggccggatcagagatttctaaaggctgtagtg
aaggagggcaaagatattaacgtggaacggggcgagcacttccaccaccaccaccatcac
tcttttgaaattaaagcctcacaaccgaatggcgaacaactgaaactgaatccggtgtcc
atcaattcgcccccatcagaaaataacgcggccccggccccggcccaaaagccaaagatt
tggtctttggcggagacagcaacaacccctgacaatccccgcaaatctccacaaatgaat
ggcagcaacacagttgggcccggggcccagaccataatcagccctcatcacagactcatc
tcttgtcctgttggaaaaatccagaactggacaaaccgagctttttctgcccaccagctc
gcattactgaactctaaccattaccttggactggcgaaccaggcttcggcgaacgggctc
gccctctacagcaggcagcaacaccaacacacgcaggacaagagtcatagctcagacaca
gccgtcacagagagatctagtgccttggaagcagagaaaaagttgttaaaaacagccttc
cacccagttcatagacggcctcagaatcaactcgaagcagccatggttctatcagctctc
gcctcctcctag
DBGET
integrated database retrieval system
