Coregonus clupeaformis (lake whitefish): 121580695
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Entry
121580695 CDS
T08357
Name
(RefSeq) CPD photolyase isoform X1
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cclu03400
]
121580695
Enzymes [BR:
cclu01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
121580695
DNA repair and recombination proteins [BR:
cclu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
121580695
Prokaryotic type
121580695
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_photolyase
Motif
Other DBs
NCBI-GeneID:
121580695
NCBI-ProteinID:
XP_041751618
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All DBs
Position
14:9411062..9439372
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AA seq
565 aa
AA seq
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MHRSLLLIPASKHIWKFVTLESQRHCYYSSLTKLVGLSTINNRTTMPAKKRKATFAKMDN
AKQQKLQAVKEGEREREKGWLQGVVAEQRKEKQDLKFNKKRLRFLSKTQKIKQGSEGVVY
WMNRDHRVQDCLLLSLTLTVDNWALIHAQQLALEEKLPLHICVCLVIPQDSELATIRHFG
FMLRGLEEVAKDCSALDIQFHLLQGSAGELLPGFVRDWILGAVVTDFSPLRTPLQWVEEV
KNGLPSDIPFIQVDAHNVVPCWVASDKLEYAARTIRTKITKLLPEFLTEMPLVDKHPHPA
VRTAKPVDWAEVLSSLEVDRTVEEVDWAKSGTAAGIAMLESFIDLRLKNFATQRNNPNSS
AVSQLSPWIRFGHLSAQRVVLQVKRSGKSAAESVSSFTEELVVRRELTDNFCFYNPNYDS
VKGANDWAQKTLKDHAKDIRPYVYTRKQLEKAQTHDKLWNAAQYQMVIEGKMHGFLRMYW
AKKILEWTSSPEGALSIAIYLNDRYELDGQDPNGFVGCMWSICGIHDQGWAERPIFGKIR
YMNYKGCTRKFDVAQFERKYCPKDL
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgcatcgcagtttgttgctcattccagcatccaagcacatttggaagtttgtgacactc
gagagccaaagacactgctactactcctccttgaccaaattagtaggcctaagcactatt
aataatcgaaccacaatgccagcaaaaaaacgcaaggcgacctttgccaaaatggacaac
gccaaacagcagaagctgcaggctgtaaaagagggtgagagggagagagaaaagggatgg
ctgcagggtgtggtggctgagcaacggaaggagaaacaggacttgaaattcaacaagaag
cgcctccgttttctgtccaaaacccagaagataaagcaaggttcagagggagtagtctac
tggatgaaccgggatcacagggtccaagattgtttgcttctctcattgactcttactgta
gataactgggcgttgatccatgcccagcagcttgccctcgaagagaagctgcccctgcac
atctgtgtctgtttggtgataccacaagactctgagttggccaccatccgccattttggc
ttcatgctgaggggactggaggaagttgctaaggactgcagtgcgctggatattcagttc
cacctgctccagggctccgctggagaactgctgccgggttttgtgcgggactggattttg
ggggcagtggtgaccgacttctcccctctaaggacgccgctgcagtgggtggaggaggtc
aaaaatggtcttccatcggatatccccttcatacaagtggatgcccataacgtggtgccc
tgctgggtggcatcagacaagctggagtatgctgccaggacgatccgtaccaagatcacc
aagcttctgcccgagttcctcacagagatgcctttagtggacaaacatccgcaccctgct
gtccgaaccgccaagccagtagactgggcagaggtattgtcctctctggaggtggacagg
acggtagaggaggtggattgggccaaatctggcactgcagcaggcatagccatgttggag
tctttcatcgacctgcgcctcaagaactttgccactcagaggaacaaccccaattcttct
gctgttagtcagctctcgccgtggatccgcttcggtcacttgtctgcccagcgcgtggtg
ctgcaggtcaagcgcagtgggaagagtgccgccgagtcagtttcctccttcacagaagaa
ctggtggtgcgcagagagttgactgataacttctgtttctacaaccccaactatgacagc
gtgaagggtgcgaatgactgggcccagaaaacgttgaaggatcacgccaaagacatcagg
ccgtacgtctatacccgcaagcagctggagaaagcccagacccacgacaagctctggaac
gcagcccagtaccagatggtgattgagggtaagatgcatggcttcctaaggatgtactgg
gccaagaagatcctggagtggacctcctcaccagagggagcgctctccatcgccatctac
ctcaacgaccgatacgagctggacgggcaggaccccaacggatttgtaggttgtatgtgg
tccatatgtgggatacatgaccagggctgggccgagagacccatcttcggaaagatacgg
tacatgaactacaaaggctgcacccgcaagtttgacgtggcacagttcgagaggaagtac
tgccccaaagacctgtaa
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