Coregonus clupeaformis (lake whitefish): 121580771
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Entry
121580771 CDS
T08357
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Pathway
cclu03013
Nucleocytoplasmic transport
cclu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
121580771
03015 mRNA surveillance pathway
121580771
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cclu03019
]
121580771
Enzymes [BR:
cclu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
121580771
5.6.2.5 RNA 5'-3' helicase
121580771
Messenger RNA biogenesis [BR:
cclu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
121580771
mRNA cycle factors
Common to processing body (P body) and stress granule
121580771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
TraI_hel_assoc_N
Motif
Other DBs
NCBI-GeneID:
121580771
NCBI-ProteinID:
XP_041751730
LinkDB
All DBs
Position
14:12273808..12283523
Genome browser
AA seq
1103 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQANGP
DGVLQNGDDPVVKASQLLAELNFEEDEEDSYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLSAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTLGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AINPGGRFMSTAMYDAREALIPGSVYDRSNTGRTSNMYFQTHDQIGMIGPGPMASMNIPI
PFNLVMPPMPPPGYLGQVNGPQAGRGGGMKGKAGGGGARGGRQRSRGMGNHGGGSVHQGL
MSGSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVA
LSQDSTYQGERAYQHGVTGLSQY
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgaggcgtacgggccgagctcgcagactctcacgttcctggacacggaggaa
gcggagttgcttggagcggatacccagggttcggagtatgagttcacggattttactctg
ccgagccagactcaaacaggccaaacgcagagtcagttggacaaccaggcgaatgggcct
gatggagttctgcagaatggggatgaccctgttgtgaaagcaagtcaacttcttgcagag
ttgaactttgaagaagatgaggaagacagctattatactaaagacctcccagttcatgca
tgcagttactgtggcattcacgatcctgcttgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacgtctggcagccacattgtgaaccacctggtcaga
gccaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtcttcctcctgggcttcatccctgccaaggcagac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaggacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctgtcctggctg
gttaagatcccctcagagcaggagcagctccgggcccgccagatcaccgcccagcagata
aacaagctggaggagctctggaaggaaaaccccacagccactctggaggacctggagaag
cccggcgtggacgaggagcctcagcacgtgttgctgcgctatgaggatgcctaccagtac
cagaacatctttggccccctggtcaaactggaggccgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgag
atttgcctgaggtataagggagaccttgccccactctggaaaggcattggacatgtcatc
aaagtcccagacaactatggtgatgagatagccattgagctgaggagcagtgctggggct
cccgtggaagtaccacataacttccaggttgactttgtgtggaaatccacctcctttgac
cggatgcagagtgccctgaagacctttgccgtggatgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggacgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcttgcctgacctcaaccactcacaggtgtatgctgtgaagact
gtgctgcagcgtcctctcagtctcatccaggggccccctggcactgggaaaactgtcacc
tccgccactgtagtgtatcacctggccagacagggcaacgggcctgtgctggtgtgcgct
cccagtaacattgcggtagaccagctgactgagaagatccacatgtcaggtctgaaagtg
gtgaggctgtctgccaagagcagagaggccatcgactcccctgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctccagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgctacagggccctgaagcgcacc
gccgagagggaactactcatgaatgctgacgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctcaatcctcatcgatgagagcacccaggcc
actgagccagagtgtatggtgcctgtcatactgggggccaagcagctgatcctggtggga
gaccactgccagctgggtccagtagtgatgtgtaaaaaggcagccaaggcaggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgccttcccctccaacatcttctatgagggctccctg
cagaacggagtcaccgcagctgaccgcatcaagaaaggctttgacttccagtggccacag
ccagacaagcccatgttcttctacgtgaccctgggccaggaggaaatcgcaagctctgga
acctcctatctaaacaggactgaggcttccaacgtggagaagatcaccaccaggctgctg
aaggctggggccaagcctgaccagatagggatcatcaccccctacgagggccagcggtcc
tacctggtgcagtacatgcagtttagtggctccctccacaccaagctctaccaggaggtg
gagatagccagcgttgatgcgttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcatcggcttcctcaacgacccgcgccgtctcaacgtg
gctctcaccagggccaggtatggggttatcattgtgggcaaccccaaagccctgtccaag
cagcctctgtggaaccacctgctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagagagagcctcatgcagttcagcaagccccgcaagctagtcaac
gccatcaaccctgggggccgtttcatgagcacagccatgtatgatgccagagaggctctt
attcctggatctgtgtatgaccgcagcaacactggacgtacatccaacatgtacttccag
acccacgaccagatcggcatgattggcccgggccccatggcctccatgaacatccccatc
cccttcaacctggtcatgcctcccatgcccccgccaggctacctgggccaggtcaacggc
ccccaagcaggccgtggtggaggtatgaagggtaaggcaggcggcggaggggcgcgaggt
gggcgccagaggagccgtggcatggggaaccacggcgggggcagcgtgcatcagggcctc
atgagtggcagccaggccagccaggacctgggctcccagcccttctcccagggaccactc
acccagggctacatcaccatgagccagccctcccagatgagccagcctggcctctcccag
cctgaactctctcaggacagctaccttggcgatgagttcaagtcccagattgacgtggcc
ctctcccaagactccacctaccaaggggaaagagcctatcaacatggtgtgactggactg
tcccagtactag
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