Coregonus clupeaformis (lake whitefish): 121580784
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Entry
121580784 CDS
T08357
Symbol
copb2
Name
(RefSeq) coatomer subunit beta' isoform X1
KO
K17302
coatomer subunit beta'
Organism
cclu
Coregonus clupeaformis (lake whitefish)
Brite
KEGG Orthology (KO) [BR:
cclu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cclu04131
]
121580784 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cclu04147
]
121580784 (copb2)
Membrane trafficking [BR:
cclu04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
121580784 (copb2)
Exosome [BR:
cclu04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
121580784 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR75_1st
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_LRRK2
Beta-prop_WDR19_1st
Beta-prop_WDR35_TULP_N
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
121580784
NCBI-ProteinID:
XP_041751748
LinkDB
All DBs
Position
14:12940955..12958434
Genome browser
AA seq
942 aa
AA seq
DB search
MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKNWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRLVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKLG
REEPAMSMDTNGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSVVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIA
TEDSFFILRYLSEKVAASQENNEGVTEDGIEDAFEVQGEIQEVVKTGLWVGDCFIYTSSV
NRLNYFVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVSYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSSDSEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLLLLATASGNAAMVGKLAEGAE
RDGKNNVAFMTYFLQGKLDHCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRESLAKV
NQKAAESLADPTEYENLFPGLKESFVAEQFLRETCLGNSRPATDYPLVTPNEERNILEEA
TGYEPKGAPLSLATPVLQAEDSGEETAPAAGVMASVLASVAAAVIPSEAKPEVAPEEEEE
SPGSSGAQKDKALDELEDDLDNMELDDIDTTDVNLDDDFLDD
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcaggctggacatcaagcggaagctgacagcccggtcagaccgcgtgaagagt
gtggacctccacccgaccgagccatggatgctggccagcctgtacaatggtagtgtctgt
gtctggaaccacgaaacacagaccttggtgaagaccttcgaagtgtgtgaccttccagtg
agagcatcgaagtttgtagccagaaagaactgggtcataactggagcggatgacatgcag
atccgtgttttcaactacaacaccctggagagggtccacatgtttgaggcccactctgac
tacatccgctgtatcgctgtgcatcccactcaaccctacatcctcacaagcagtgacgac
atgctgatcaagctgtgggactgggagaagaaatggtcttgcagtcaggtgtttgagggc
cacacccactacgtcatgcagatcgtcatcaaccctaaagacaacaaccagtttgccagc
gcttctctggacagaaccatcaaggtatggcagctgggctcctcctctcctaactttacc
cttgagggccatgagaaaggagtcaactgcattgactactacagcggaggggacaagccc
tacctcatatcaggagctgatgaccgcctggtcaagatctgggactaccagaacaagacg
tgtgtgcagaccctggagggccacgcccagaatgtgtcgtgtgtcagctttcacccagag
ctgcctatcatcatcacaggatcagaggacggcactgtgcgtatctggcactcgagtacg
taccgcctggagagcaccctgaactacggcatggagcgtgtgtggtgtgtgtgtggcctg
agaggctccaacaatgtggccttaggctacgacgaaggcagcatcatcatcaagctgggg
cgtgaggagccagccatgtccatggacaccaatgggaagatcatctgggccaagcactcg
gaggtgcagcaggcaaacctgaaggccatgggcgacgcagagatcaaggacggagagagg
ctgccgctggctgtcaaagacatgggcagctgtgaaatctacccccagaccatccagcac
aaccccaacggaaggtttgttgtggtgtgtggagacggagagtacatcatctacactgcc
atggccctgaggaacaagagcttcggctcagcacaggagtttgtctgggcacacgactcc
tccgagtatgccatcagggaaagcaacagtgtggtcaaaatcttcaagaacttcaaggag
aagaagtctttcaagccagactttggtgctgaaggtatctatggaggctttttgctgggc
gtcaggtcagtgaacggtctggccttctatgactgggaaaacacagagctgatccgccgc
atcgagatccagcccaaacatatcttctggtcagactcaggggagttggtgtgtattgcc
acagaggattccttcttcatcctgcgctacctgtcagagaaagtagccgcctcccaagag
aacaacgagggagtgaccgaggatggcatcgaagacgcctttgaggtccagggggagatc
caggaggtggtgaagacaggcctgtgggtgggagactgcttcatctacaccagctctgtc
aacagactcaactactttgtggggggagagatagtcaccatcgctcacctggacaggacc
atgtacctgctgggctacatccccaaggacgaccgcctgtacctgggcgacaaggagctg
aacatagtcagttactccctgctggtgtctgtgctggagtaccagacggctgtgatgcgc
agggactttggcatggccgacaaagtgctgcccaccatccccaaggagcagaggacccgc
gtagcacacttcctggagaaacagggcttcaagcagcaggctctggccgtgtcatcagac
tcagagcacaggtttgagctggccctgcagctgggggagctgaagatcgcctatcagctg
gctgtggaggcagagtcggagcagaagtggaagcagctggcagagctggccatcagtaag
tgccagtttagcctggcccaggagtgccttcatcacgcccaggactacggtggcctgctg
ctgctcgccaccgcctcaggcaacgccgccatggtgggcaagctggctgagggcgccgag
cgggacggcaagaacaacgtggctttcatgacctacttcctgcaggggaaactggaccat
tgtctggagctgctgatccggaccaaccggctgcctgaggcggccttcctggcccgcacc
tatctgcccagccaggtgtccagggttgtcaagctgtggagggaaagtctggccaaggtc
aaccagaaggcggccgagtcgctggccgaccccactgagtatgagaacctgttccccggg
ctgaaggagtcgttcgtggccgagcagttcctccgggagacctgcctgggaaactcccgg
ccggccaccgactaccctctcgtcactcccaatgaagaacgtaatatactagaggaggcc
acgggctacgagcccaaaggagctcccctctccctcgctacaccggtactgcaggctgaa
gacagcggcgaggagaccgcgccggcagcaggcgtgatggcgtccgtgttggcgtccgtg
gctgcagccgtgatcccctcggaggcaaagcctgaggttgcacctgaggaggaggaggaa
agccccggctcatctggggcacagaaggacaaggccctggacgaacttgaagacgacctg
gacaacatggagctggacgacatcgataccacagacgtcaacctggacgacgacttctta
gatgactga
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